CRAN Package Check Results for Maintainer ‘Isaac Gravestock <isaac.gravestock at roche.com>’

Last updated on 2025-12-07 07:50:30 CET.

Package ERROR WARN NOTE OK
bonsaiforest 1 3 9
maicplus 1 12
psborrow 13
TrialEmulation 1 12

Package bonsaiforest

Current CRAN status: WARN: 1, NOTE: 3, OK: 9

Version: 0.1.1
Check: package dependencies
Result: WARN Cannot process vignettes Packages suggested but not available for checking: 'knitr', 'rmarkdown' VignetteBuilder package required for checking but not installed: ‘knitr’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.1
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.1
Check: installed package size
Result: NOTE installed size is 10.3Mb sub-directories of 1Mb or more: data 8.4Mb libs 1.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package maicplus

Current CRAN status: ERROR: 1, OK: 12

Version: 0.1.2
Check: package dependencies
Result: WARN Cannot process vignettes Packages suggested but not available for checking: 'knitr', 'rmarkdown', 'survminer' VignetteBuilder package required for checking but not installed: ‘knitr’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: examples
Result: ERROR Running examples in ‘maicplus-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: basic_kmplot2 > ### Title: Basic Kaplan Meier (KM) plot function using ggplot > ### Aliases: basic_kmplot2 > > ### ** Examples > > library(survival) > data(adtte_sat) > data(pseudo_ipd_sat) > > kmobj_A <- survfit(Surv(TIME, EVENT) ~ ARM, + data = adtte_sat, + conf.type = "log-log" + ) > > kmobj_B <- survfit(Surv(TIME, EVENT) ~ ARM, + data = pseudo_ipd_sat, + conf.type = "log-log" + ) > > kmlist <- list(kmobj_A = kmobj_A, kmobj_B = kmobj_B) > kmlist_name <- c("A", "B") > > basic_kmplot2(kmlist, kmlist_name) Error in basic_kmplot2(kmlist, kmlist_name) : survminer package is required for this function Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [13s/17s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > pkg_name <- "maicplus" > library(pkg_name, character.only = TRUE) > testthat::test_check(pkg_name) result pvalue "-0.17[-0.61; 0.28]" "0.535" NULL NULL NULL NULL Saving _problems/test-plot_km2-27.R [ FAIL 1 | WARN 0 | SKIP 16 | PASS 85 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • On CRAN (16): 'test-maic_anchored.R:1:1', 'test-maic_anchored.R:69:1', 'test-maic_unanchored.R:1:1', 'test-maic_unanchored.R:164:1', 'test-matching.R:192:1', 'test-matching.R:220:1', 'test-matching.R:233:1', 'test-matching.R:261:1', 'test-plot_km.R:1:1', 'test-plot_km.R:32:1', 'test-plot_km.R:64:1', 'test-plot_km.R:96:1', 'test-plot_km.R:127:1', 'test-plot_km.R:167:1', 'test-plot_km.R:206:1', 'test-plot_km.R:235:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plot_km2.R:11:7'): kmplot2 works ─────────────────────────────── Error in `kmplot2(weights_object = weighted_twt, tte_ipd = adtte_twt, tte_pseudo_ipd = pseudo_ipd_twt, trt_ipd = "A", trt_agd = "B", trt_common = "C", trt_var_ipd = "ARM", trt_var_agd = "ARM", endpoint_name = "Overall Survival", km_conf_type = "log-log", km_layout = "by_trial", time_scale = "month", break_x_by = 2)`: survminer package is required for this function Backtrace: ▆ 1. └─vdiffr::expect_doppelganger(...) at test-plot_km2.R:8:3 2. └─vdiffr (local) writer(fig, testcase, title) 3. ├─vdiffr:::print_plot(plot, title) 4. └─vdiffr:::print_plot.function(plot, title) 5. └─maicplus (local) p() 6. ├─base::suppressWarnings(...) at test-plot_km2.R:11:7 7. │ └─base::withCallingHandlers(...) 8. └─maicplus::kmplot2(...) [ FAIL 1 | WARN 0 | SKIP 16 | PASS 85 ] Deleting unused snapshots: 'plot_km2/kmplot2-all.svg', 'plot_km2/kmplot2-by-am.svg', and 'plot_km2/kmplot2-normalize-by-trial.svg' Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-devel-linux-x86_64-debian-gcc

Package psborrow

Current CRAN status: OK: 13

Package TrialEmulation

Current CRAN status: WARN: 1, OK: 12

Version: 0.0.4.8
Check: package dependencies
Result: WARN Cannot process vignettes Packages suggested but not available for checking: 'knitr', 'rmarkdown' VignetteBuilder package required for checking but not installed: ‘knitr’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.0.4.8
Check: package vignettes
Result: NOTE Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file? Flavor: r-devel-linux-x86_64-debian-gcc