Last updated on 2025-05-31 13:50:07 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| bonsaiforest | 3 | 10 | |
| maicplus | 13 | ||
| psborrow | 13 | ||
| rbmi | 1 | 12 | |
| TrialEmulation | 9 | 4 |
Current CRAN status: NOTE: 3, OK: 10
Version: 0.1.1
Check: installed package size
Result: NOTE
installed size is 10.3Mb
sub-directories of 1Mb or more:
data 8.4Mb
libs 1.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 1.4.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [176s/257s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rbmi)
>
> if (Sys.getenv("NOT_CRAN") != "true") {
+ Sys.setenv(RBMI_ENABLE_CACHE = "false")
+ options(rbmi.enable_cache = FALSE)
+ }
>
> test_check("rbmi")
mmrm() registered as emmeans extension
[ FAIL 4 | WARN 0 | SKIP 15 | PASS 1261 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• On CRAN (1): 'test-mmrm.R:337:5'
• is_full_test() is not TRUE (14): 'test-draws.R:115:5',
'test-fullusage.R:43:5', 'test-fullusage.R:117:5', 'test-fullusage.R:209:5',
'test-fullusage.R:300:5', 'test-fullusage.R:431:5', 'test-fullusage.R:520:5',
'test-fullusage.R:675:5', 'test-mcmc.R:327:5', 'test-mcmc.R:504:5',
'test-mcmc.R:635:5', 'test-parallel.R:8:5', 'test-reproducibility.R:9:5',
'test-reproducibility.R:140:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-draws.R:144:9'): bayes ─────────────────────────────────────────
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmpmAvuMH/working_dir/RtmpoSUdOK/file1f810850bf6380.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-draws.R:143:5
2. │ └─base::withCallingHandlers(...)
3. ├─rbmi::draws(d$dat, d$dat_ice, d$vars, meth, quiet = TRUE) at test-draws.R:144:9
4. └─rbmi:::draws.bayes(d$dat, d$dat_ice, d$vars, meth, quiet = TRUE)
5. └─rbmi:::fit_mcmc(...)
── Error ('test-mcmc.R:108:13'): Verbose suppression works ─────────────────────
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmpmAvuMH/working_dir/RtmpoSUdOK/file1f81083dccc3ec.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-mcmc.R:106:5
2. │ └─base::withCallingHandlers(...)
3. ├─utils::capture.output(...) at test-mcmc.R:107:9
4. │ └─base::withVisible(...elt(i))
5. ├─rbmi::draws(...) at test-mcmc.R:108:13
6. └─rbmi:::draws.bayes(...)
7. └─rbmi:::fit_mcmc(...)
── Error ('test-print.R:102:9'): print - bayesian ──────────────────────────────
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmpmAvuMH/working_dir/RtmpoSUdOK/file1f81086499d038.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-print.R:101:5
2. │ └─base::withCallingHandlers(...)
3. ├─rbmi::draws(...) at test-print.R:102:9
4. └─rbmi:::draws.bayes(...)
5. └─rbmi:::fit_mcmc(...)
── Error ('test-reproducibility.R:128:9'): bayes - set.seed produces identical results ──
Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,
1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],
subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/RtmpmAvuMH/working_dir/RtmpoSUdOK/file1f810852533187.so':
libunwind.so.1: cannot open shared object file: No such file or directory
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-reproducibility.R:127:5
2. │ └─base::withCallingHandlers(...)
3. ├─rbmi::draws(dat, dat_ice, vars, meth, quiet = TRUE) at test-reproducibility.R:128:9
4. └─rbmi:::draws.bayes(dat, dat_ice, vars, meth, quiet = TRUE)
5. └─rbmi:::fit_mcmc(...)
[ FAIL 4 | WARN 0 | SKIP 15 | PASS 1261 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 9, OK: 4
Version: 0.0.4.2
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘calculate_weights.Rd’ ‘fit_msm.Rd’ ‘load_expanded_data.Rd’
‘save_to_csv.Rd’ ‘save_to_datatable.Rd’ ‘save_to_duckdb.Rd’
‘set_censor_weight_model.Rd’ ‘set_data.Rd’ ‘set_expansion_options.Rd’
‘set_outcome_model.Rd’ ‘set_switch_weight_model.Rd’
‘weight_model_data_indices.Rd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64