CRAN Package Check Results for Package hydroloom

Last updated on 2025-12-20 07:48:43 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.1.1	10.04	209.88	219.92	OK
r-devel-linux-x86_64-debian-gcc	1.1.1	7.18	128.01	135.19	ERROR
r-devel-linux-x86_64-fedora-clang	1.1.1	18.00	333.35	351.35	ERROR
r-devel-linux-x86_64-fedora-gcc	1.1.1	17.00	320.77	337.77	ERROR
r-devel-windows-x86_64	1.1.1	13.00	155.00	168.00	OK
r-patched-linux-x86_64	1.1.1	9.72	184.32	194.04	OK
r-release-linux-x86_64	1.1.1	9.69	182.73	192.42	OK
r-release-macos-arm64	1.1.1				OK
r-release-macos-x86_64	1.1.1	6.00	180.00	186.00	OK
r-release-windows-x86_64	1.1.1	13.00	153.00	166.00	OK
r-oldrel-macos-arm64	1.1.1				OK
r-oldrel-macos-x86_64	1.1.1	6.00	172.00	178.00	OK
r-oldrel-windows-x86_64	1.1.1	16.00	200.00	216.00	OK

Check Details

Version: 1.1.1
Check: examples
Result: ERROR Running examples in ‘hydroloom-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: disambiguate_indexes > ### Title: Disambiguate Flowline Indexes > ### Aliases: disambiguate_indexes > > ### ** Examples > > if(require(nhdplusTools)) { + source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) + + hydro_location <- sf::st_sf(id = c(1, 2, 3), + geom = sf::st_sfc(list(sf::st_point(c(-76.86934, 39.49328)), + sf::st_point(c(-76.91711, 39.40884)), + sf::st_point(c(-76.88081, 39.36354))), + crs = 4326), + totda = c(23.6, 7.3, 427.9), + nameid = c("Patapsco", "", "Falls Run River")) + + indexes <- index_points_to_lines(sample_flines, + hydro_location, + search_radius = units::set_units(0.2, "degrees"), + max_matches = 10) + + disambiguate_indexes(indexes, + dplyr::select(sample_flines, COMID, TotDASqKM), + dplyr::select(hydro_location, id, totda)) + + result <- disambiguate_indexes(indexes, + dplyr::select(sample_flines, COMID, GNIS_NAME), + dplyr::select(hydro_location, id, nameid)) + + result[result$point_id == 1, ] + + result[result$point_id == 2, ] + + result[result$point_id == 3, ] + } Loading required package: nhdplusTools Attaching package: ‘nhdplusTools’ The following object is masked from ‘package:hydroloom’: make_node_topology Warning in index_points_to_lines.hy(x, points, search_radius = search_radius, : converting to LINESTRING, this may be slow, check results Error in `[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id)) : attempt access index 4/4 in VECTOR_ELT Calls: index_points_to_lines ... index_points_to_lines.hy -> left_join -> matcher_dt -> [ -> [.data.table Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [47s/25s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(hydroloom) > > test_check("hydroloom") Starting 2 test processes. > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |========================================================== | 83% > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |========================================================== | 83% > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: | | | 0% | |=================================== | 50% > test_check_hy_graph.R: | | | 0% | |=================================== | 50% > test_check_hy_graph.R: | | | 0% | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% | |========= | 13% > test_check_hy_graph.R: | |=================== | 27% > test_check_hy_graph.R: | |============================ | 40% > test_check_hy_graph.R: | |====================================== | 54% > test_check_hy_graph.R: | |=============================================== | 67% > test_check_hy_graph.R: | |======================================================== | 80% > test_check_hy_graph.R: | |================================================================== | 94% | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |===== | 8% > test_check_hy_graph.R: | |=========== | 15% > test_check_hy_graph.R: | |================ | 23% > test_check_hy_graph.R: | |===================== | 30% > test_check_hy_graph.R: | |========================== | 38% > test_check_hy_graph.R: | > test_check_hy_graph.R: |================================ | 45% > test_check_hy_graph.R: | |===================================== | 53% > test_check_hy_graph.R: | |========================================== | 60% > test_check_hy_graph.R: | > test_check_hy_graph.R: |=============================================== | 68% > test_check_hy_graph.R: | |===================================================== | 75% > test_check_hy_graph.R: | |========================================================== | 83% > test_check_hy_graph.R: | > test_check_hy_graph.R: |=============================================================== | 90% > test_check_hy_graph.R: | |===================================================================== | 98% | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |========= | 13% > test_check_hy_graph.R: | |================== | 26% > test_check_hy_graph.R: | |=========================== | 38% > test_check_hy_graph.R: | |==================================== | 51% > test_check_hy_graph.R: | |============================================= | 64% > test_check_hy_graph.R: | |====================================================== | 77% > test_check_hy_graph.R: | |=============================================================== | 90% > test_check_hy_graph.R: | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% | |======================================================================| 100% Saving _problems/test_get_hydro_location-13.R > test_hydroloom.R: no hy class attribute > test_hydroloom.R: some na toids > test_hydroloom.R: no original names attribute > test_hydroloom.R: no hy class attribute Saving _problems/test_index-17.R Saving _problems/test_index-77.R Saving _problems/test_index-132.R Saving _problems/test_index-156.R Saving _problems/test_index-211.R Saving _problems/test_index-245.R Saving _problems/test_index-269.R [ FAIL 8 | WARN 4 | SKIP 1 | PASS 343 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test_add_levelpaths.R:158:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_get_hydro_location.R:13:3'): get location ────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─hydroloom::index_points_to_lines(sample_flines, points) at test_get_hydro_location.R:13:3 2. └─hydroloom:::index_points_to_lines.data.frame(sample_flines, points) 3. ├─hydroloom::index_points_to_lines(...) 4. └─hydroloom:::index_points_to_lines.hy(...) 5. ├─dplyr::left_join(...) 6. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 7. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 8. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:16:3'): index to waterbodies ─────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test_index.R:16:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─hydroloom::index_points_to_waterbodies(wb, gage_l) 8. └─hydroloom:::matcher_dt(waterbodies, st_coordinates(points), search_radius) 9. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 10. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:72:3'): point indexing to nearest existing node works as expected ── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:72:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point) 5. └─hydroloom:::index_points_to_lines.data.frame(flines_in, point) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:128:5'): point indexing works without measures ───────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:128:5 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point) 5. └─hydroloom:::index_points_to_lines.data.frame(flines_in, point) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:147:3'): point indexing to for multiple points works ─── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:147:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point, search_radius = sr) 5. └─hydroloom:::index_points_to_lines.data.frame(...) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:210:3'): multipart indexing ──────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::capture_warnings(...) at test_index.R:210:3 2. │ └─base::withCallingHandlers(...) 3. ├─hydroloom::index_points_to_lines(lines, points, search_radius = 500) 4. └─hydroloom:::index_points_to_lines.data.frame(lines, points, search_radius = 500) 5. ├─hydroloom::index_points_to_lines(...) 6. └─hydroloom:::index_points_to_lines.hy(...) 7. ├─dplyr::left_join(...) 8. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 9. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 10. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:241:3'): no duplicates when using precision ──────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─dplyr::filter(...) at test_index.R:241:3 2. ├─hydroloom::index_points_to_lines(...) 3. └─hydroloom:::index_points_to_lines.data.frame(...) 4. ├─hydroloom::index_points_to_lines(...) 5. └─hydroloom:::index_points_to_lines.hy(...) 6. ├─dplyr::left_join(...) 7. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 8. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 9. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:266:3'): disambiguate ────────────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─hydroloom::index_points_to_lines(...) at test_index.R:266:3 2. └─hydroloom:::index_points_to_lines.data.frame(...) 3. ├─hydroloom::index_points_to_lines(...) 4. └─hydroloom:::index_points_to_lines.hy(...) 5. ├─dplyr::left_join(...) 6. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 7. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 8. └─data.table:::`[.data.table`(...) [ FAIL 8 | WARN 4 | SKIP 1 | PASS 343 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.1
Check: examples
Result: ERROR Running examples in ‘hydroloom-Ex.R’ failed The error most likely occurred in: > ### Name: disambiguate_indexes > ### Title: Disambiguate Flowline Indexes > ### Aliases: disambiguate_indexes > > ### ** Examples > > if(require(nhdplusTools)) { + source(system.file("extdata", "sample_flines.R", package = "nhdplusTools")) + + hydro_location <- sf::st_sf(id = c(1, 2, 3), + geom = sf::st_sfc(list(sf::st_point(c(-76.86934, 39.49328)), + sf::st_point(c(-76.91711, 39.40884)), + sf::st_point(c(-76.88081, 39.36354))), + crs = 4326), + totda = c(23.6, 7.3, 427.9), + nameid = c("Patapsco", "", "Falls Run River")) + + indexes <- index_points_to_lines(sample_flines, + hydro_location, + search_radius = units::set_units(0.2, "degrees"), + max_matches = 10) + + disambiguate_indexes(indexes, + dplyr::select(sample_flines, COMID, TotDASqKM), + dplyr::select(hydro_location, id, totda)) + + result <- disambiguate_indexes(indexes, + dplyr::select(sample_flines, COMID, GNIS_NAME), + dplyr::select(hydro_location, id, nameid)) + + result[result$point_id == 1, ] + + result[result$point_id == 2, ] + + result[result$point_id == 3, ] + } Loading required package: nhdplusTools Attaching package: ‘nhdplusTools’ The following object is masked from ‘package:hydroloom’: make_node_topology Warning in index_points_to_lines.hy(x, points, search_radius = search_radius, : converting to LINESTRING, this may be slow, check results Error in `[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id)) : attempt access index 4/4 in VECTOR_ELT Calls: index_points_to_lines ... index_points_to_lines.hy -> left_join -> matcher_dt -> [ -> [.data.table Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [137s/113s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(hydroloom) > > test_check("hydroloom") Starting 2 test processes. > test_check_hy_graph.R: | > test_check_hy_graph.R: | | 0% > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: | |========================================================== | 83% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |========================================================== | 83% > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |=================================== | 50% > test_check_hy_graph.R: | > test_check_hy_graph.R: | | 0% | |=================================== | 50% > test_check_hy_graph.R: | > test_check_hy_graph.R: | | 0% | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |======================================================================| 100% > test_check_hy_graph.R: | > test_check_hy_graph.R: | | 0% > test_check_hy_graph.R: | |========= | 13% > test_check_hy_graph.R: | |=================== | 27% > test_check_hy_graph.R: | > test_check_hy_graph.R: |============================ | 40% > test_check_hy_graph.R: | > test_check_hy_graph.R: |====================================== | 54% > test_check_hy_graph.R: | |=============================================== | 67% > test_check_hy_graph.R: | > test_check_hy_graph.R: |======================================================== | 80% > test_check_hy_graph.R: | > test_check_hy_graph.R: |================================================================== | 94% > test_check_hy_graph.R: | > test_check_hy_graph.R: |======================================================================| 100% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | > test_check_hy_graph.R: |===== | 8% > test_check_hy_graph.R: | > test_check_hy_graph.R: |=========== | 15% > test_check_hy_graph.R: | > test_check_hy_graph.R: |================ | 23% > test_check_hy_graph.R: | |===================== | 30% > test_check_hy_graph.R: | |========================== | 38% > test_check_hy_graph.R: | |================================ | 45% > test_check_hy_graph.R: | |===================================== | 53% > test_check_hy_graph.R: | |========================================== | 60% > test_check_hy_graph.R: | |=============================================== | 68% > test_check_hy_graph.R: | |===================================================== | 75% > test_check_hy_graph.R: | > test_check_hy_graph.R: |========================================================== | 83% > test_check_hy_graph.R: | > test_check_hy_graph.R: |=============================================================== | 90% > test_check_hy_graph.R: | > test_check_hy_graph.R: |===================================================================== | 98% > test_check_hy_graph.R: | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | > test_check_hy_graph.R: |========= | 13% > test_check_hy_graph.R: | |================== | 26% > test_check_hy_graph.R: | |=========================== | 38% > test_check_hy_graph.R: | > test_check_hy_graph.R: |==================================== | 51% > test_check_hy_graph.R: | |============================================= | 64% > test_check_hy_graph.R: | > test_check_hy_graph.R: |====================================================== | 77% > test_check_hy_graph.R: | |=============================================================== | 90% > test_check_hy_graph.R: | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |======================================================================| 100% Saving _problems/test_get_hydro_location-13.R > test_hydroloom.R: no hy class attribute > test_hydroloom.R: some na toids > test_hydroloom.R: no original names attribute > test_hydroloom.R: no hy class attribute Saving _problems/test_index-17.R Saving _problems/test_index-77.R Saving _problems/test_index-132.R Saving _problems/test_index-156.R Saving _problems/test_index-211.R Saving _problems/test_index-245.R Saving _problems/test_index-269.R [ FAIL 8 | WARN 4 | SKIP 1 | PASS 343 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test_add_levelpaths.R:158:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_get_hydro_location.R:13:3'): get location ────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─hydroloom::index_points_to_lines(sample_flines, points) at test_get_hydro_location.R:13:3 2. └─hydroloom:::index_points_to_lines.data.frame(sample_flines, points) 3. ├─hydroloom::index_points_to_lines(...) 4. └─hydroloom:::index_points_to_lines.hy(...) 5. ├─dplyr::left_join(...) 6. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 7. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 8. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:16:3'): index to waterbodies ─────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test_index.R:16:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─hydroloom::index_points_to_waterbodies(wb, gage_l) 8. └─hydroloom:::matcher_dt(waterbodies, st_coordinates(points), search_radius) 9. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 10. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:72:3'): point indexing to nearest existing node works as expected ── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:72:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point) 5. └─hydroloom:::index_points_to_lines.data.frame(flines_in, point) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:128:5'): point indexing works without measures ───────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:128:5 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point) 5. └─hydroloom:::index_points_to_lines.data.frame(flines_in, point) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:147:3'): point indexing to for multiple points works ─── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:147:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point, search_radius = sr) 5. └─hydroloom:::index_points_to_lines.data.frame(...) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:210:3'): multipart indexing ──────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::capture_warnings(...) at test_index.R:210:3 2. │ └─base::withCallingHandlers(...) 3. ├─hydroloom::index_points_to_lines(lines, points, search_radius = 500) 4. └─hydroloom:::index_points_to_lines.data.frame(lines, points, search_radius = 500) 5. ├─hydroloom::index_points_to_lines(...) 6. └─hydroloom:::index_points_to_lines.hy(...) 7. ├─dplyr::left_join(...) 8. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 9. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 10. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:241:3'): no duplicates when using precision ──────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─dplyr::filter(...) at test_index.R:241:3 2. ├─hydroloom::index_points_to_lines(...) 3. └─hydroloom:::index_points_to_lines.data.frame(...) 4. ├─hydroloom::index_points_to_lines(...) 5. └─hydroloom:::index_points_to_lines.hy(...) 6. ├─dplyr::left_join(...) 7. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 8. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 9. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:266:3'): disambiguate ────────────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─hydroloom::index_points_to_lines(...) at test_index.R:266:3 2. └─hydroloom:::index_points_to_lines.data.frame(...) 3. ├─hydroloom::index_points_to_lines(...) 4. └─hydroloom:::index_points_to_lines.hy(...) 5. ├─dplyr::left_join(...) 6. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 7. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 8. └─data.table:::`[.data.table`(...) [ FAIL 8 | WARN 4 | SKIP 1 | PASS 343 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [123s/94s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(hydroloom) > > test_check("hydroloom") Starting 2 test processes. > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: | |========================================================== | 83% > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: | > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: found loop at 3 > test_check_hy_graph.R: | | 0% > test_check_hy_graph.R: | |========================================================== | 83% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | |=================================== | 50% > test_check_hy_graph.R: | | | 0% | |=================================== | 50% > test_check_hy_graph.R: | | | 0% | |======================================================================| 100% > test_check_hy_graph.R: | | | 0% | |======================================================================| 100% > test_check_hy_graph.R: | > test_check_hy_graph.R: | | 0% > test_check_hy_graph.R: | > test_check_hy_graph.R: |========= | 13% > test_check_hy_graph.R: | |=================== | 27% > test_check_hy_graph.R: | |============================ | 40% > test_check_hy_graph.R: | |====================================== | 54% > test_check_hy_graph.R: | |=============================================== | 67% > test_check_hy_graph.R: | |======================================================== | 80% > test_check_hy_graph.R: | > test_check_hy_graph.R: |================================================================== | 94% > test_check_hy_graph.R: | |======================================================================| 100% > test_check_hy_graph.R: | > test_check_hy_graph.R: | | 0% > test_check_hy_graph.R: | > test_check_hy_graph.R: |===== | 8% > test_check_hy_graph.R: | |=========== | 15% > test_check_hy_graph.R: | |================ | 23% > test_check_hy_graph.R: | > test_check_hy_graph.R: |===================== | 30% > test_check_hy_graph.R: | > test_check_hy_graph.R: |========================== | 38% > test_check_hy_graph.R: | > test_check_hy_graph.R: |================================ | 45% > test_check_hy_graph.R: | > test_check_hy_graph.R: |===================================== | 53% > test_check_hy_graph.R: | > test_check_hy_graph.R: |========================================== | 60% > test_check_hy_graph.R: | |=============================================== | 68% > test_check_hy_graph.R: | > test_check_hy_graph.R: |===================================================== | 75% > test_check_hy_graph.R: | > test_check_hy_graph.R: |========================================================== | 83% > test_check_hy_graph.R: | > test_check_hy_graph.R: |=============================================================== | 90% > test_check_hy_graph.R: | > test_check_hy_graph.R: |===================================================================== | 98% > test_check_hy_graph.R: | > test_check_hy_graph.R: |======================================================================| 100% > test_check_hy_graph.R: > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | > test_check_hy_graph.R: |========= | 13% > test_check_hy_graph.R: | > test_check_hy_graph.R: |================== | 26% > test_check_hy_graph.R: | > test_check_hy_graph.R: |=========================== | 38% > test_check_hy_graph.R: | > test_check_hy_graph.R: |==================================== | 51% > test_check_hy_graph.R: | > test_check_hy_graph.R: |============================================= | 64% > test_check_hy_graph.R: | |====================================================== | 77% > test_check_hy_graph.R: | |=============================================================== | 90% > test_check_hy_graph.R: | > test_check_hy_graph.R: |======================================================================| 100% > test_check_hy_graph.R: | | | 0% > test_check_hy_graph.R: | > test_check_hy_graph.R: |======================================================================| 100% Saving _problems/test_get_hydro_location-13.R > test_hydroloom.R: no hy class attribute > test_hydroloom.R: some na toids > test_hydroloom.R: no original names attribute > test_hydroloom.R: no hy class attribute Saving _problems/test_index-17.R Saving _problems/test_index-77.R Saving _problems/test_index-132.R Saving _problems/test_index-156.R Saving _problems/test_index-211.R Saving _problems/test_index-245.R Saving _problems/test_index-269.R [ FAIL 8 | WARN 4 | SKIP 1 | PASS 343 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test_add_levelpaths.R:158:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_get_hydro_location.R:13:3'): get location ────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─hydroloom::index_points_to_lines(sample_flines, points) at test_get_hydro_location.R:13:3 2. └─hydroloom:::index_points_to_lines.data.frame(sample_flines, points) 3. ├─hydroloom::index_points_to_lines(...) 4. └─hydroloom:::index_points_to_lines.hy(...) 5. ├─dplyr::left_join(...) 6. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 7. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 8. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:16:3'): index to waterbodies ─────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test_index.R:16:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─hydroloom::index_points_to_waterbodies(wb, gage_l) 8. └─hydroloom:::matcher_dt(waterbodies, st_coordinates(points), search_radius) 9. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 10. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:72:3'): point indexing to nearest existing node works as expected ── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:72:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point) 5. └─hydroloom:::index_points_to_lines.data.frame(flines_in, point) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:128:5'): point indexing works without measures ───────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:128:5 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point) 5. └─hydroloom:::index_points_to_lines.data.frame(flines_in, point) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:147:3'): point indexing to for multiple points works ─── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test_index.R:147:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─hydroloom::index_points_to_lines(flines_in, point, search_radius = sr) 5. └─hydroloom:::index_points_to_lines.data.frame(...) 6. ├─hydroloom::index_points_to_lines(...) 7. └─hydroloom:::index_points_to_lines.hy(...) 8. ├─dplyr::left_join(...) 9. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 10. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 11. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:210:3'): multipart indexing ──────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─testthat::capture_warnings(...) at test_index.R:210:3 2. │ └─base::withCallingHandlers(...) 3. ├─hydroloom::index_points_to_lines(lines, points, search_radius = 500) 4. └─hydroloom:::index_points_to_lines.data.frame(lines, points, search_radius = 500) 5. ├─hydroloom::index_points_to_lines(...) 6. └─hydroloom:::index_points_to_lines.hy(...) 7. ├─dplyr::left_join(...) 8. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 9. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 10. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:241:3'): no duplicates when using precision ──────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─dplyr::filter(...) at test_index.R:241:3 2. ├─hydroloom::index_points_to_lines(...) 3. └─hydroloom:::index_points_to_lines.data.frame(...) 4. ├─hydroloom::index_points_to_lines(...) 5. └─hydroloom:::index_points_to_lines.hy(...) 6. ├─dplyr::left_join(...) 7. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 8. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 9. └─data.table:::`[.data.table`(...) ── Error ('test_index.R:266:3'): disambiguate ────────────────────────────────── Error in ``[.data.table`(matched, , `:=`(N, seq_len(.N)), by = list(point_id))`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. ├─hydroloom::index_points_to_lines(...) at test_index.R:266:3 2. └─hydroloom:::index_points_to_lines.data.frame(...) 3. ├─hydroloom::index_points_to_lines(...) 4. └─hydroloom:::index_points_to_lines.hy(...) 5. ├─dplyr::left_join(...) 6. └─hydroloom:::matcher_dt(x, points, search_radius, max_matches = max_matches) 7. ├─matched[, `:=`(N, seq_len(.N)), by = list(point_id)] 8. └─data.table:::`[.data.table`(...) [ FAIL 8 | WARN 4 | SKIP 1 | PASS 343 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc