CRAN Package Check Results for Maintainer ‘Dr. Himadri Ghosh <hghosh at gmail.com>’

Last updated on 2026-10-24 01:52:04 CEST.

Package	OK	ERROR
ABSurvTDC	12	1
BaseTempSeed	13
EstHTSeed	13
ExtendedABSurvTDC	12	1
HTSeed	13
HTSeedGLM	13

Package ABSurvTDC

Current CRAN status: OK: 12, ERROR: 1

Version: 0.1.0
Check: examples
Result: ERROR Running examples in ‘ABSurvTDC-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: CoxPred > ### Title: ABCoxPH Prediction > ### Aliases: CoxPred > > ### ** Examples > > library("ABSurvTDC") > library("readxl") > data_test<-read_excel(path = system.file("extdata/data_test.xlsx", package = "ABSurvTDC")) > PropData<-DataPrep(data =as.data.frame(data_test)) No time interval specified, defaulting to 90 days Max no. of lactations to be considered not specified. Defaulting to the max no. present among all animals in data > model<-ABCoxPH(PropData) CoxPH model considering all lactations available in wide data Warning in agreg.fit(X, Y, istrat, offset, init, control, weights = weights, : Loglik converged before variable 7,10,11 ; beta may be infinite. > Lact_1<-c("Yes","Yes","Yes","No","No","No","No","No","No","No","No") > Lact_2<-c("No","No","No","No","Yes","Yes","No","No","No","No","No") > Lact_3<-c("No","No","No","No","No","No","No","No","Yes","Yes","Yes") > Lact_4<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_5<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_6<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_7<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_8<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_9<-c("No","No","No","No","No","No","No","No","No","No","No") > ndata<- data.frame(Lact_1,Lact_2,Lact_3,Lact_4,Lact_5,Lact_6,Lact_7, + Lact_8,Lact_9) > HYS<-2033 > AFC <- 1400 > CoxPred(Model=model, NewData=ndata, AFC, HYS) Error in a$specials[[i]] : subscript out of bounds Calls: CoxPred ... survfit.coxph -> model.matrix.coxph -> delete.response -> off Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package BaseTempSeed

Current CRAN status: OK: 13

Package EstHTSeed

Current CRAN status: OK: 13

Package ExtendedABSurvTDC

Current CRAN status: OK: 12, ERROR: 1

Version: 0.1.0
Check: examples
Result: ERROR Running examples in ‘ExtendedABSurvTDC-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ExtendedCoxPred > ### Title: ExtendedABCoxPH Prediction > ### Aliases: ExtendedCoxPred > > ### ** Examples > > library("ExtendedABSurvTDC") > load(system.file("extdata", "data.RData", package = "ExtendedABSurvTDC")) > PropData<-DataPrep(data =as.data.frame(data_test)) No time interval specified, defaulting to 90 days Max no. of lactations to be considered not specified. Defaulting to the max no. present among all animals in data > model<-ExtendedABSurvTDC(PropData) CoxPH model considering all lactations available in wide data Warning in agreg.fit(X, Y, istrat, offset, init, control, weights = weights, : Loglik converged before variable 10,13,14 ; beta may be infinite. > Lact_1<-c("Yes","Yes","Yes","No","No","No","No","No","No","No","No") > Lact_2<-c("No","No","No","No","Yes","Yes","No","No","No","No","No") > Lact_3<-c("No","No","No","No","No","No","No","No","Yes","Yes","Yes") > Lact_4<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_5<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_6<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_7<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_8<-c("No","No","No","No","No","No","No","No","No","No","No") > Lact_9<-c("No","No","No","No","No","No","No","No","No","No","No") > ndata<- data.frame(Lact_1,Lact_2,Lact_3,Lact_4,Lact_5,Lact_6,Lact_7, + Lact_8,Lact_9) > NewData<-ndata > HYS<-2033 > AFC <- 1400 > Y=as.factor(1) > S=as.factor(1) > H=as.factor(1) > NewData_default <- data.frame(AFC, Y, S, NewData) # Data for default argument of "factors" > ExtendedCoxPred(Model=model, NewData=NewData_default) Error in a$specials[[i]] : subscript out of bounds Calls: ExtendedCoxPred ... survfit.coxph -> model.matrix.coxph -> delete.response -> off Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package HTSeed

Current CRAN status: OK: 13

Package HTSeedGLM

Current CRAN status: OK: 13