Last updated on 2025-12-20 08:49:18 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| dynpred | 13 | ||
| icpack | 13 | ||
| mstate | 3 | 10 |
Current CRAN status: NOTE: 13
Version: 0.1.2
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Hein Putter <H.Putter@lumc.nl>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Hein",
family = "Putter",
role = c("aut", "cre"),
email = "h.putter@lumc.nl")
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: Rd files
Result: NOTE
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:33: Escaped LaTeX specials: \&
checkRd: (-1) NKI-breast-cancer-clinical-data.Rd:37: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:26: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:31: Escaped LaTeX specials: \&
checkRd: (-1) WBC-follow-up-data.Rd:41: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:13: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:14: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:25: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:30: Escaped LaTeX specials: \&
checkRd: (-1) WBC-measurements-data.Rd:40: Escaped LaTeX specials: \&
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.1.2
Check: compiled code
Result: NOTE
File ‘dynpred/libs/dynpred.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 3, OK: 10
Version: 0.3.3
Check: examples
Result: ERROR
Running examples in ‘mstate-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.Cuminc
> ### Title: Plot method for Cuminc objects
> ### Aliases: plot.Cuminc
>
> ### ** Examples
>
> library(ggplot2)
>
> data("aidssi")
> head(aidssi)
patnr time status cause ccr5
1 1 9.106 1 AIDS WW
2 2 11.039 0 event-free WM
3 3 2.234 1 AIDS WW
4 4 9.878 2 SI WM
5 5 3.819 1 AIDS WW
6 6 6.801 1 AIDS WW
> si <- aidssi
>
> # No grouping
> cum_incid <- Cuminc(
+ time = "time",
+ status = "status",
+ data = si
+ )
>
> plot(
+ x = cum_incid,
+ use.ggplot = TRUE,
+ conf.type = "none",
+ lty = 1:2,
+ conf.int = 0.95
+ )
Error in `[.data.table`(df_long, , `:=`(CI_low = make_prob_confint(prob, :
attempt access index 6/6 in VECTOR_ELT
Calls: plot ... ggplot.Cuminc -> prep_Cuminc_df -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘visuals_demo.Rmd’ using rmarkdown
Quitting from visuals_demo.Rmd:202-205 [plot_pt_filled2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─base::plot(pt.WW, use.ggplot = TRUE)
2. └─mstate:::plot.probtrans(pt.WW, use.ggplot = TRUE)
3. └─mstate:::ggplot.probtrans(...)
4. └─mstate:::prep_probtrans_df(...)
5. ├─df_long[, `:=`(cum_probs, cumsum(prob)), by = time]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'visuals_demo.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘visuals_demo.Rmd’
--- re-building ‘Tutorial.Rnw’ using Sweave
Loading required package: survival
--- finished re-building ‘Tutorial.Rnw’
SUMMARY: processing the following file failed:
‘visuals_demo.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.3
Check: examples
Result: ERROR
Running examples in ‘mstate-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot.Cuminc
> ### Title: Plot method for Cuminc objects
> ### Aliases: plot.Cuminc
>
> ### ** Examples
>
> library(ggplot2)
>
> data("aidssi")
> head(aidssi)
patnr time status cause ccr5
1 1 9.106 1 AIDS WW
2 2 11.039 0 event-free WM
3 3 2.234 1 AIDS WW
4 4 9.878 2 SI WM
5 5 3.819 1 AIDS WW
6 6 6.801 1 AIDS WW
> si <- aidssi
>
> # No grouping
> cum_incid <- Cuminc(
+ time = "time",
+ status = "status",
+ data = si
+ )
>
> plot(
+ x = cum_incid,
+ use.ggplot = TRUE,
+ conf.type = "none",
+ lty = 1:2,
+ conf.int = 0.95
+ )
Error in `[.data.table`(df_long, , `:=`(CI_low = make_prob_confint(prob, :
attempt access index 6/6 in VECTOR_ELT
Calls: plot ... ggplot.Cuminc -> prep_Cuminc_df -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘visuals_demo.Rmd’ using rmarkdown
Quitting from visuals_demo.Rmd:202-205 [plot_pt_filled2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─base::plot(pt.WW, use.ggplot = TRUE)
2. └─mstate:::plot.probtrans(pt.WW, use.ggplot = TRUE)
3. └─mstate:::ggplot.probtrans(...)
4. └─mstate:::prep_probtrans_df(...)
5. ├─df_long[, `:=`(cum_probs, cumsum(prob)), by = time]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'visuals_demo.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘visuals_demo.Rmd’
--- re-building ‘Tutorial.Rnw’ using Sweave
Loading required package: survival
--- finished re-building ‘Tutorial.Rnw’
SUMMARY: processing the following file failed:
‘visuals_demo.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc