CRAN Package Check Results for Package gllvm

Last updated on 2026-07-01 06:02:06 CEST.

Additional issues

noLD rchk

Check Details

Version: 2.0.11
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘vignette1.Rmd’ using rmarkdown --- finished re-building ‘vignette1.Rmd’ --- re-building ‘vignette10.Rmd’ using rmarkdown --- finished re-building ‘vignette10.Rmd’ --- re-building ‘vignette2.rmd’ using rmarkdown --- finished re-building ‘vignette2.rmd’ --- re-building ‘vignette3.rmd’ using rmarkdown Quitting from vignette3.rmd:147-152 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `FAstart()`: ! Calculating starting values failed. Maybe too many latent variables. Try smaller 'num.lv' value or change 'starting.val' to 'zero' or 'random'. --- Backtrace: ▆ 1. └─gllvm::gllvm(y = spider$abund, family = poisson(), num.lv = 2) 2. └─gllvm:::gllvm.iter(...) 3. ├─base::do.call(gllvm.TMB, args) 4. └─gllvm (local) `<fn>`(...) 5. └─gllvm:::start_values_gllvm_TMB(...) 6. └─gllvm:::FAstart(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette3.rmd' failed with diagnostics: Calculating starting values failed. Maybe too many latent variables. Try smaller 'num.lv' value or change 'starting.val' to 'zero' or 'random'. --- failed re-building ‘vignette3.rmd’ --- re-building ‘vignette4.rmd’ using rmarkdown --- finished re-building ‘vignette4.rmd’ --- re-building ‘vignette5.Rmd’ using rmarkdown --- finished re-building ‘vignette5.Rmd’ --- re-building ‘vignette6.Rmd’ using rmarkdown --- finished re-building ‘vignette6.Rmd’ --- re-building ‘vignette7.Rmd’ using rmarkdown --- finished re-building ‘vignette7.Rmd’ --- re-building ‘vignette8.Rmd’ using rmarkdown --- finished re-building ‘vignette8.Rmd’ --- re-building ‘vignette9.Rmd’ using rmarkdown --- finished re-building ‘vignette9.Rmd’ SUMMARY: processing the following file failed: ‘vignette3.rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64