Last updated on 2025-12-07 07:50:27 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| gemma2 | 1 | 5 | 7 | |
| qtl2pleio | 1 | 4 | 8 |
Current CRAN status: WARN: 1, NOTE: 5, OK: 7
Version: 0.1.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'covr', 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘methods’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.3
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 4, OK: 8
Version: 1.4.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Frederick J Boehm <frederick.boehm@gmail.com>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.4.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'covr', 'knitr', 'rmarkdown', 'broman', 'devtools', 'qtl2'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.3
Check: examples
Result: ERROR
Running examples in ‘qtl2pleio-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: convert_to_scan1_output
> ### Title: Convert 'scan_multi_oneqtl' output of 'qtl2::scan1' output
> ### Aliases: convert_to_scan1_output
>
> ### ** Examples
>
> # read data
> iron <- qtl2::read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
Error in loadNamespace(x) : there is no package called ‘qtl2’
Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.3
Check: installed package size
Result: NOTE
installed size is 27.2Mb
sub-directories of 1Mb or more:
libs 26.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.4.3
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64