Last updated on 2025-12-07 07:50:26 CET.
| Package | ERROR | WARN | OK |
|---|---|---|---|
| treedater | 1 | 12 | |
| treestructure | 1 | 12 |
Current CRAN status: WARN: 1, OK: 12
Version: 1.0.2
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.7.0
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'ggtree', 'knitr', 'rmarkdown', 'bookdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.7.0
Check: examples
Result: ERROR
Running examples in ‘treestructure-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.TreeStructure
> ### Title: Plot TreeStructure tree with cluster and partition variables
> ### Aliases: plot.TreeStructure
>
> ### ** Examples
>
>
> #tree <- ape::read.tree( system.file('sim.nwk', package = 'treestructure') )
> # you can run the example below before plotting
> #struc <- trestruct( tree )
>
> #because it can take a minute or so to run treestructure, we will load it here
> struc <- readRDS( system.file('struc_plot_example.rds', package='treestructure') )
> #plot treestructure object
>
> suppressWarnings(plot(struc))
Error in .plot.TreeStructure.ggtree(x, ...) :
"ggtree" %in% utils::installed.packages()[, 1] is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.7.0
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc