Last updated on 2025-03-31 12:52:40 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 4.05 | 176.51 | 180.56 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.6 | 3.50 | 109.24 | 112.74 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.7 | 314.93 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.7 | 302.07 | OK | |||
| r-devel-macos-arm64 | 1.0.7 | 64.00 | OK | |||
| r-devel-macos-x86_64 | 1.0.7 | 129.00 | OK | |||
| r-devel-windows-x86_64 | 1.0.6 | 7.00 | 180.00 | 187.00 | OK | |
| r-patched-linux-x86_64 | 1.0.6 | 6.57 | 164.82 | 171.39 | OK | |
| r-release-linux-x86_64 | 1.0.6 | 5.85 | 161.74 | 167.59 | OK | |
| r-release-macos-arm64 | 1.0.7 | 74.00 | OK | |||
| r-release-macos-x86_64 | 1.0.7 | 105.00 | OK | |||
| r-release-windows-x86_64 | 1.0.7 | 8.00 | 184.00 | 192.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.7 | 41.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.7 | 118.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.7 | 11.00 | 181.00 | 192.00 | OK |
Version: 1.0.7
Check: examples
Result: ERROR
Running examples in ‘dtComb-Ex.R’ failed
The error most likely occurred in:
> ### Name: linComb
> ### Title: Linear Combination Methods for Diagnostic Test Scores
> ### Aliases: linComb
>
> ### ** Examples
>
> # call data
> data(laparotomy)
>
> # define the function parameters
> markers <- laparotomy[, -1]
> status <- factor(laparotomy$group, levels = c("not_needed", "needed"))
> event <- "needed"
>
> score1 <- linComb(
+ markers = markers, status = status, event = event,
+ method = "logistic", resample = "none", show.plot = TRUE,
+ standardize = "none", direction = "<", cutoff.method = "Youden"
+ )
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘systemfonts’
Calls: linComb ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.7
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dtComb)
> # require(APtools)
> # # library(usethis)
>
> test_check("dtComb")
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 23 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-linComb.R:31:3'): (code run outside of `test_that()`) ──────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─dtComb::linComb(...) at test-linComb.R:31:3
2. │ └─dtComb:::rocsum(...)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImportFrom(...)
5. │ └─base::asNamespace(ns)
6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7. ├─base::namespaceImportFrom(...)
8. │ └─base::asNamespace(ns)
9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14. └─base (local) withOneRestart(expr, restarts[[1L]])
15. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-mathComb.R:31:3'): (code run outside of `test_that()`) ─────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─dtComb::mathComb(...) at test-mathComb.R:31:3
2. │ └─dtComb:::rocsum(...)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImportFrom(...)
5. │ └─base::asNamespace(ns)
6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7. ├─base::namespaceImportFrom(...)
8. │ └─base::asNamespace(ns)
9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14. └─base (local) withOneRestart(expr, restarts[[1L]])
15. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-nonlinComb.R:29:3'): (code run outside of `test_that()`) ───────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─dtComb::nonlinComb(...) at test-nonlinComb.R:29:3
2. │ └─dtComb:::rocsum(...)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImportFrom(...)
5. │ └─base::asNamespace(ns)
6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7. ├─base::namespaceImportFrom(...)
8. │ └─base::asNamespace(ns)
9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14. └─base (local) withOneRestart(expr, restarts[[1L]])
15. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-predComb.R:37:3'): (code run outside of `test_that()`) ─────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─dtComb::linComb(...) at test-predComb.R:37:3
2. │ └─dtComb:::rocsum(...)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImportFrom(...)
5. │ └─base::asNamespace(ns)
6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7. ├─base::namespaceImportFrom(...)
8. │ └─base::asNamespace(ns)
9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14. └─base (local) withOneRestart(expr, restarts[[1L]])
15. └─base (local) doWithOneRestart(return(expr), restart)
── Error ('test-standardize.R:43:3'): (code run outside of `test_that()`) ──────
<packageNotFoundError/error/condition>
Error in `loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])`: there is no package called 'systemfonts'
Backtrace:
▆
1. ├─dtComb::linComb(...) at test-standardize.R:43:3
2. │ └─dtComb:::rocsum(...)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImportFrom(...)
5. │ └─base::asNamespace(ns)
6. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7. ├─base::namespaceImportFrom(...)
8. │ └─base::asNamespace(ns)
9. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10. ├─base::namespaceImportFrom(...)
11. │ └─base::asNamespace(ns)
12. └─base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14. └─base (local) withOneRestart(expr, restarts[[1L]])
15. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 23 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘vignettedtComb.Rnw’ using knitr
Quitting from vignettedtComb.Rnw:221-235 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'systemfonts'
---
Backtrace:
x
1. +-dtComb::linComb(...)
2. | \-dtComb:::rocsum(...)
3. \-base::loadNamespace(x)
4. +-base::namespaceImportFrom(...)
5. | \-base::asNamespace(ns)
6. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
7. +-base::namespaceImportFrom(...)
8. | \-base::asNamespace(ns)
9. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
10. +-base::namespaceImportFrom(...)
11. | \-base::asNamespace(ns)
12. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
13. \-base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
14. \-base (local) withOneRestart(expr, restarts[[1L]])
15. \-base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'vignettedtComb.Rnw' failed with diagnostics:
there is no package called 'systemfonts'
--- failed re-building ‘vignettedtComb.Rnw’
SUMMARY: processing the following file failed:
‘vignettedtComb.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64