Last updated on 2025-12-20 08:49:15 CET.
| Package | ERROR | NOTE |
|---|---|---|
| doremi | 3 | 10 |
Current CRAN status: ERROR: 3, NOTE: 10
Version: 1.0.0
Check: package subdirectories
Result: NOTE
Problems with news in ‘NEWS.md’:
Cannot extract version info from the following section titles:
New features
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.0
Check: Rd files
Result: NOTE
checkRd: (-1) analyze.1order.Rd:49: Lost braces
49 | Although only the first derivative is used here, using a higher order can enhance derivative estimation (see \doi{10.1080/00273171.2015.1123138}{Chow et al.(2016)})}
| ^
checkRd: (-1) analyze.2order.Rd:44: Lost braces
44 | 2 in second order differential equations), for instance, order=4 might enhance derivative estimation (see \doi{10.1080/00273171.2015.1123138}{Chow et al.(2016)})}
| ^
checkRd: (-1) calculate.fda.Rd:29: Lost braces
29 | method described in several sources, such as in \doi{10.1007/b98888}{Ramsay et al. (2009)}
| ^
checkRd: (-1) calculate.fda.Rd:30: Lost braces
30 | and \doi{10.1080/00273171.2015.1123138}{Chow et al. (2016)}.
| ^
checkRd: (-1) calculate.glla.Rd:34: Lost braces
34 | described in \doi{10.4324/9780203864746}{Boker et al.(2010)}.
| ^
checkRd: (-1) calculate.gold.Rd:33: Lost braces
33 | method described in \doi{10.1080/00273171.2010.498294}{Deboeck (2010)}. The code available on this paper was extracted and adapted for non constant time steps.
| ^
checkRd: (-1) optimum_param.Rd:47: Lost braces
47 | Using a higher order can enhance derivative estimation (see \doi{10.1080/00273171.2015.1123138}{Chow et al.(2016)})}
| ^
checkRd: (-1) rotation.Rd:37: Lost braces
37 | \doi{10.1016/j.yhbeh.2012.12.007}{(Courvoisier et al., 2013)}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘doremi-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: analyze.1order
> ### Title: DOREMI first order analysis function
> ### Aliases: analyze.1order
> ### Keywords: analysis exponential first-order
>
> ### ** Examples
>
> myresult <- analyze.1order(data = cardio,
+ id = "id",
+ input = "load",
+ time = "time",
+ signal = "hr",
+ dermethod ="gold",
+ derparam = 5)
Error in `[.data.table`(intdata, , `:=`(timedup, lapply(.SD, duplicated)), :
attempt access index 4/4 in VECTOR_ELT
Calls: analyze.1order -> [ -> [.data.table
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Introduction-to-doremi.Rmd’ using rmarkdown
Quitting from Introduction-to-doremi.Rmd:37-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─doremi::generate.panel.1order(...)
2. ├─data[, `:=`(time, time), by = id]
3. └─data.table:::`[.data.table`(data, , `:=`(time, time), by = id)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction-to-doremi.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘Introduction-to-doremi.Rmd’
--- re-building ‘derivatives.Rmd’ using rmarkdown
Quitting from derivatives.Rmd:98-105 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. ├─...[]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'derivatives.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘derivatives.Rmd’
--- re-building ‘first-order.Rmd’ using rmarkdown
Quitting from first-order.Rmd:109-114 [simulation example1a]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─doremi::generate.panel.1order(...)
2. ├─data[, `:=`(time, time), by = id]
3. └─data.table:::`[.data.table`(data, , `:=`(time, time), by = id)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'first-order.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘first-order.Rmd’
--- re-building ‘second-order.Rmd’ using rmarkdown
Quitting from second-order.Rmd:110-122 [simulation example 1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─doremi::generate.panel.2order(...)
2. ├─data[, `:=`(time, time), by = id]
3. └─data.table:::`[.data.table`(data, , `:=`(time, time), by = id)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'second-order.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘second-order.Rmd’
SUMMARY: processing the following files failed:
‘Introduction-to-doremi.Rmd’ ‘derivatives.Rmd’ ‘first-order.Rmd’
‘second-order.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘gridExtra’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘doremi-Ex.R’ failed
The error most likely occurred in:
> ### Name: analyze.1order
> ### Title: DOREMI first order analysis function
> ### Aliases: analyze.1order
> ### Keywords: analysis exponential first-order
>
> ### ** Examples
>
> myresult <- analyze.1order(data = cardio,
+ id = "id",
+ input = "load",
+ time = "time",
+ signal = "hr",
+ dermethod ="gold",
+ derparam = 5)
Error in `[.data.table`(intdata, , `:=`(timedup, lapply(.SD, duplicated)), :
attempt access index 4/4 in VECTOR_ELT
Calls: analyze.1order -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Introduction-to-doremi.Rmd’ using rmarkdown
Quitting from Introduction-to-doremi.Rmd:37-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─doremi::generate.panel.1order(...)
2. ├─data[, `:=`(time, time), by = id]
3. └─data.table:::`[.data.table`(data, , `:=`(time, time), by = id)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction-to-doremi.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘Introduction-to-doremi.Rmd’
--- re-building ‘derivatives.Rmd’ using rmarkdown
Quitting from derivatives.Rmd:98-105 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 7/7 in VECTOR_ELT
---
Backtrace:
▆
1. ├─...[]
2. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'derivatives.Rmd' failed with diagnostics:
attempt access index 7/7 in VECTOR_ELT
--- failed re-building ‘derivatives.Rmd’
--- re-building ‘first-order.Rmd’ using rmarkdown
Quitting from first-order.Rmd:109-114 [simulation example1a]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─doremi::generate.panel.1order(...)
2. ├─data[, `:=`(time, time), by = id]
3. └─data.table:::`[.data.table`(data, , `:=`(time, time), by = id)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'first-order.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘first-order.Rmd’
--- re-building ‘second-order.Rmd’ using rmarkdown
Quitting from second-order.Rmd:110-122 [simulation example 1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 1/1 in VECTOR_ELT
---
Backtrace:
▆
1. └─doremi::generate.panel.2order(...)
2. ├─data[, `:=`(time, time), by = id]
3. └─data.table:::`[.data.table`(data, , `:=`(time, time), by = id)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'second-order.Rmd' failed with diagnostics:
attempt access index 1/1 in VECTOR_ELT
--- failed re-building ‘second-order.Rmd’
SUMMARY: processing the following files failed:
‘Introduction-to-doremi.Rmd’ ‘derivatives.Rmd’ ‘first-order.Rmd’
‘second-order.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc