Last updated on 2025-04-21 14:49:51 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| arkdb | 1 | 12 | |
| codemeta | 13 | ||
| codemetar | 6 | 7 | |
| contentid | 13 | ||
| duckdbfs | 1 | 12 | |
| earthdatalogin | 10 | 3 | |
| EcoNetGen | 13 | ||
| EML | 6 | 7 | |
| emld | 3 | 10 | |
| gbifdb | 13 | ||
| knitcitations | 13 | ||
| minioclient | 13 | ||
| neonstore | 10 | 3 | |
| piggyback | 13 | ||
| pmc | 13 | ||
| rdflib | 13 | ||
| rfigshare | 13 | ||
| rfishbase | 10 | 3 | |
| RNeXML | 13 | ||
| sarsop | 3 | 10 | |
| taxadb | 10 | 3 | |
| taxalight | 13 | ||
| treebase | 13 | ||
| virtuoso | 13 |
Current CRAN status: NOTE: 1, OK: 12
Version: 0.0.18
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘arrow’
Flavor: r-oldrel-macos-x86_64
Version: 0.0.18
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘arrow’
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 0.3.5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
create_codemeta.Rd: write_json
write_codemeta.Rd: write_json
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.1.0
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [7s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(duckdbfs)
>
>
>
>
> test_check("duckdbfs")
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 15 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• On CRAN (15): 'test-h3.R:4:3', 'test-open_dataset.R:16:3',
'test-open_dataset.R:37:3', 'test-open_dataset.R:60:3',
'test-open_dataset.R:71:3', 'test-secrets.R:4:1', 'test-spatial.R:4:3',
'test-spatial.R:22:3', 'test-spatial.R:43:3', 'test-spatial.R:74:3',
'test-write_dataset.R:6:3', 'test-write_dataset.R:37:3',
'test-write_dataset.R:62:3', 'test-write_dataset.R:81:3',
'test-write_dataset.R:126:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-load_extension.R:4:3'): extensions installation ────────────────
Error in `duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)`: rapi_execute: Failed to run query
Error: Invalid Input Error: Initialization function "httpfs_init" from file "/data/gannet/ripley/.local/share/R/duckdb/extensions/v1.2.1/linux_amd64_gcc4/httpfs.duckdb_extension" threw an exception: "Attempted to dereference unique_ptr that is NULL!"
Backtrace:
▆
1. ├─duckdbfs:::load_httpfs(nightly = FALSE, force = FALSE) at test-load_extension.R:4:3
2. │ └─duckdbfs:::load_extension(...)
3. │ ├─DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))
4. │ └─DBI::dbExecute(conn, glue::glue("LOAD '{extension}';"))
5. │ ├─DBI::dbSendStatement(conn, statement, ...)
6. │ └─DBI::dbSendStatement(conn, statement, ...)
7. │ ├─DBI::dbSendQuery(conn, statement, ...)
8. │ └─duckdb::dbSendQuery(conn, statement, ...)
9. │ └─duckdb (local) .local(conn, statement, ...)
10. │ └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
11. │ └─duckdb:::duckdb_execute(res)
12. │ └─duckdb:::rethrow_rapi_execute(...)
13. │ ├─rlang::try_fetch(...)
14. │ │ ├─base::tryCatch(...)
15. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
16. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
17. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
18. │ │ └─base::withCallingHandlers(...)
19. │ └─duckdb:::rapi_execute(stmt, arrow, integer64)
20. └─base::.handleSimpleError(...)
21. └─rlang (local) h(simpleError(msg, call))
22. └─handlers[[1L]](cnd)
23. └─duckdb:::rethrow_error_from_rapi(e, call)
24. └─rlang::abort(msg, call = call)
[ FAIL 1 | WARN 0 | SKIP 15 | PASS 15 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Current CRAN status: NOTE: 10, OK: 3
Version: 0.0.2
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘edl_set_token.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 6, OK: 7
Version: 2.0.6.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
write_eml.Rd: write_xml
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0.6.1
Flags: --no-vignettes
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
write_eml.Rd: write_xml
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 0.5.1
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 0.5.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘neon_cloud.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 13
Version: 0.3.8
Check: Rd files
Result: NOTE
checkRd: (-1) fs_search.Rd:76: Lost braces
76 | \\code{\link{fs_auth}} \code{\link{fs_browse}}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 5.0.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘common_names.R’ ‘distribution.R’ ‘fb_tbl.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 13
Version: 2.4.11
Check: Rd files
Result: NOTE
checkRd: (-1) nexml_get.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) nexml_get.Rd:35: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 3, OK: 10
Version: 0.6.16
Check: installed package size
Result: NOTE
installed size is 5.3Mb
sub-directories of 1Mb or more:
bin 4.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 10, OK: 3
Version: 0.2.1
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘parse_schema.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13