Last updated on 2025-12-07 07:50:22 CET.
| Package | ERROR | WARN | OK |
|---|---|---|---|
| mixtree | 1 | 12 | |
| o2ools | 1 | 12 | |
| pipetime | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 0.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘treespace’
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.0.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'outbreaker2', 'mixtree', 'epicontacts'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘o2ools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_accuracy
> ### Title: Calculate the accuracy of outbreak reconstruction
> ### Aliases: get_accuracy
>
> ### ** Examples
>
> true_tree <- data.frame(from = as.character(outbreaker2::fake_outbreak$ances), to = linelist$id)
Error in loadNamespace(x) : there is no package called ‘outbreaker2’
Calls: data.frame ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: WARN: 1, OK: 12
Version: 0.0.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc