Last updated on 2025-12-07 07:50:22 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| aRxiv | 1 | 12 | ||
| broman | 1 | 2 | 10 | |
| chromer | 13 | |||
| lineup | 1 | 12 | ||
| lineup2 | 1 | 12 | ||
| mbmixture | 1 | 12 | ||
| mmconvert | 13 | |||
| negenes | 1 | 2 | 10 | |
| qtl | 1 | 2 | 3 | 7 |
| qtl2 | 1 | 3 | 9 | |
| qtl2convert | 1 | 12 | ||
| qtl2fst | 1 | 12 | ||
| qtlbook | 1 | 12 | ||
| qtlcharts | 1 | 12 | ||
| regress | 13 | |||
| simcross | 1 | 12 | ||
| xoi | 1 | 2 | 10 |
Current CRAN status: WARN: 1, OK: 12
Version: 0.14
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'devtools', 'knitr', 'rmarkdown', 'roxygen2'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.14
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, WARN: 2, OK: 10
Version: 0.90
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.90
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
See ‘/data/gannet/ripley/R/packages/tests-clang/broman.Rcheck/00install.out’ for details.
* used C compiler: ‘clang version 21.1.6’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.90
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-devel/include/R_ext/PrtUtil.h:35:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp]
See ‘/data/gannet/ripley/R/packages/tests-devel/broman.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.44
Check: package dependencies
Result: ERROR
Package required but not available: ‘qtl’
Packages suggested but not available for checking:
'roxygen2', 'knitr', 'rmarkdown', 'devtools'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: WARN: 1, OK: 12
Version: 0.6
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'devtools', 'roxygen2'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: WARN: 1, OK: 12
Version: 0.6
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'devtools', 'roxygen2'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, WARN: 2, OK: 10
Version: 1.2
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
See ‘/data/gannet/ripley/R/packages/tests-clang/negenes.Rcheck/00install.out’ for details.
* used C compiler: ‘clang version 21.1.6’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-devel/include/R_ext/PrtUtil.h:31:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp]
See ‘/data/gannet/ripley/R/packages/tests-devel/negenes.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: ERROR: 1, WARN: 2, NOTE: 3, OK: 7
Version: 1.72
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.72
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
See ‘/data/gannet/ripley/R/packages/tests-clang/qtl.Rcheck/00install.out’ for details.
* used C compiler: ‘clang version 21.1.6’
* used C++ compiler: ‘clang version 21.1.6’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.72
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-devel/include/R_ext/PrtUtil.h:31:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp]
See ‘/data/gannet/ripley/R/packages/tests-devel/qtl.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
* used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.72
Check: installed package size
Result: NOTE
installed size is 11.5Mb
sub-directories of 1Mb or more:
R 2.0Mb
contrib 3.7Mb
doc 3.0Mb
libs 1.3Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 0.38
Check: package dependencies
Result: ERROR
Package required but not available: ‘yaml’
Packages suggested but not available for checking:
'devtools', 'roxygen2', 'qtl'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.38
Check: installed package size
Result: NOTE
installed size is 48.4Mb
sub-directories of 1Mb or more:
extdata 3.3Mb
libs 43.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.30
Check: package dependencies
Result: ERROR
Packages required but not available: 'qtl', 'qtl2'
Packages suggested but not available for checking: 'devtools', 'roxygen2'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.30
Check: package dependencies
Result: ERROR
Package required but not available: ‘qtl2’
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.20
Check: examples
Result: ERROR
Running examples in ‘qtlbook-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ch3a
> ### Title: Data with a phenotype error
> ### Aliases: ch3a
> ### Keywords: datasets
>
> ### ** Examples
>
> data(ch3a)
>
> # phenotype problem
> pairs(ch3a$pheno)
> ch3a$pheno[ch3a$pheno[,4]==0,] # individual 159
phe1 phe2 phe3 phe4 phe5
159 50 75 70 0 80
>
> # individuals with similar genotypes
> library(qtl)
Error in library(qtl) : there is no package called ‘qtl’
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 0.18
Check: package dependencies
Result: ERROR
Packages required but not available: 'qtl', 'htmlwidgets'
Packages suggested but not available for checking:
'knitr', 'devtools', 'roxygen2', 'rmarkdown'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, OK: 12
Version: 0.6
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'qtl', 'knitr', 'rmarkdown', 'devtools', 'roxygen2'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6
Check: examples
Result: ERROR
Running examples in ‘simcross-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: convert2geno_allchr
> ### Title: Convert continuous allele information into marker genotypes for
> ### multiple chromosomes
> ### Aliases: convert2geno_allchr
> ### Keywords: utilities
>
> ### ** Examples
>
> library(qtl)
Error in library(qtl) : there is no package called ‘qtl’
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.6
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, WARN: 2, OK: 10
Version: 0.72
Check: package dependencies
Result: ERROR
Package required but not available: ‘qtl’
Packages suggested but not available for checking: 'devtools', 'roxygen2'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.72
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-clang/include/R_ext/PrtUtil.h:31:2: warning: non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-W#warnings]
See ‘/data/gannet/ripley/R/packages/tests-clang/xoi.Rcheck/00install.out’ for details.
* used C compiler: ‘clang version 21.1.6’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.72
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
/data/gannet/ripley/R/R-devel/include/R_ext/PrtUtil.h:31:2: warning: #warning non-API header file R_ext/PrtUtil.h is obsolete and will be removed [-Wcpp]
See ‘/data/gannet/ripley/R/packages/tests-devel/xoi.Rcheck/00install.out’ for details.
* used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
Flavor: r-devel-linux-x86_64-fedora-gcc