CRAN Package Check Results for Maintainer ‘Karl Broman <broman at wisc.edu>’

Last updated on 2025-11-16 07:50:04 CET.

Package	ERROR	NOTE	OK
aRxiv	4		9
broman			13
chromer			13
lineup			13
lineup2			13
mbmixture			13
mmconvert			13
negenes			13
qtl		3	10
qtl2		3	10
qtl2convert			13
qtl2fst			13
qtlbook			13
qtlcharts			13
regress			13
simcross			13
xoi			13

Package aRxiv

Current CRAN status: ERROR: 4, OK: 9

Version: 0.12
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘aRxiv.Rmd’ using rmarkdown Quitting from aRxiv.Rmd:67-70 [arxiv_count] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `arxiv_count()`: ! arXiv error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application. --- Backtrace: ▆ 1. └─aRxiv::arxiv_count("au:\"Peter Hall\"") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'aRxiv.Rmd' failed with diagnostics: arXiv error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application. --- failed re-building ‘aRxiv.Rmd’ SUMMARY: processing the following file failed: ‘aRxiv.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Version: 0.12
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘aRxiv.Rmd’ using rmarkdown Error in curl::curl_fetch_memory(url, handle = handle) : Timeout was reached [export.arxiv.org]: Operation timed out after 1009 milliseconds with 0 bytes received Quitting from aRxiv.Rmd:168-173 [illustrate_AND] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! XML content does not seem to be XML: '' --- Backtrace: ▆ 1. └─aRxiv::arxiv_count("au:Peter au:Hall") 2. └─aRxiv:::result2list(search_result) 3. └─XML::xmlParse(httr::content(searchresult, "text"), asText = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'aRxiv.Rmd' failed with diagnostics: XML content does not seem to be XML: '' --- failed re-building ‘aRxiv.Rmd’ SUMMARY: processing the following file failed: ‘aRxiv.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.12
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'aRxiv.Rmd' using rmarkdown Quitting from aRxiv.Rmd:67-70 [arxiv_count] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `arxiv_count()`: ! arXiv error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application. --- Backtrace: ▆ 1. └─aRxiv::arxiv_count("au:\"Peter Hall\"") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'aRxiv.Rmd' failed with diagnostics: arXiv error: The server encountered an internal error and was unable to complete your request. Either the server is overloaded or there is an error in the application. --- failed re-building 'aRxiv.Rmd' SUMMARY: processing the following file failed: 'aRxiv.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

Package broman

Current CRAN status: OK: 13

Package chromer

Current CRAN status: OK: 13

Package lineup

Current CRAN status: OK: 13

Package lineup2

Current CRAN status: OK: 13

Package mbmixture

Current CRAN status: OK: 13

Package mmconvert

Current CRAN status: OK: 13

Package negenes

Current CRAN status: OK: 13

Package qtl

Current CRAN status: NOTE: 3, OK: 10

Version: 1.70
Check: installed package size
Result: NOTE installed size is 11.5Mb sub-directories of 1Mb or more: R 2.1Mb contrib 3.7Mb doc 3.0Mb libs 1.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package qtl2

Current CRAN status: NOTE: 3, OK: 10

Version: 0.38
Check: installed package size
Result: NOTE installed size is 48.4Mb sub-directories of 1Mb or more: extdata 3.3Mb libs 43.7Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package qtl2convert

Current CRAN status: OK: 13

Package qtl2fst

Current CRAN status: OK: 13

Package qtlbook

Current CRAN status: OK: 13

Package qtlcharts

Current CRAN status: OK: 13

Package regress

Current CRAN status: OK: 13

Package simcross

Current CRAN status: OK: 13

Package xoi

Current CRAN status: OK: 13