CRAN Package Check Results for Maintainer ‘Bernd Gruber <bernd.gruber at canberra.edu.au>’

Last updated on 2026-04-28 08:53:58 CEST.

Package	ERROR	NOTE	OK
dartR		2	11
dartR.base	2		11
dartR.captive	2		11
dartR.data			13
dartR.popgen	4		9
dartR.spatial	2		11
dartRverse			13
PopGenReport			13

Package dartR

Current CRAN status: NOTE: 2, OK: 11

Version: 2.9.9.5
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘foreach’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package dartR.base

Current CRAN status: ERROR: 2, OK: 11

Version: 1.2.3
Check: package dependencies
Result: ERROR Packages required but not available: 'SNPRelate', 'snpStats' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64

Version: 1.2.3
Check: examples
Result: ERROR Running examples in ‘dartR.base-Ex.R’ failed The error most likely occurred in: > ### Name: gl.filter.ld > ### Title: Filters loci based on linkage disequilibrium (LD) > ### Aliases: gl.filter.ld > > ### ** Examples > > if ((requireNamespace("snpStats", quietly = TRUE)) & (requireNamespace("fields", quietly = TRUE))) { + test <- gl.filter.callrate(platypus.gl, threshold = 1) + test <- gl.filter.monomorphs(test) + report <- gl.report.ld.map(test) + res <- gl.filter.ld(x=test,ld.report = report) + } Starting gl.filter.callrate Processing genlight object with SNP data Warning: data include loci that are scored NA across all individuals. Consider filtering using gl <- gl.filter.allna(gl) Warning: Data may include monomorphic loci in call rate calculations for filtering Recalculating Call Rate Removing loci based on Call Rate, threshold = 1 Completed: gl.filter.callrate Starting gl.filter.monomorphs Processing genlight object with SNP data Identifying monomorphic loci Removing monomorphic loci and loci with all missing data Completed: gl.filter.monomorphs Starting gl.report.ld.map Processing genlight object with SNP data There is no information in the chromosome/position slot of the genlight object. Assigning the same chromosome ('1') to all the SNPs in the dataset. Assigning a sequence from 1 to n loci as the position of each SNP. Calculating LD for all possible SNP pair combinations Calculating pairwise LD in population SEVERN_ABOVE *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: snpStats::ld(genotype_loci, genotype_loci, stats = ld.stat) 2: gl.report.ld.map(test) An irrecoverable exception occurred. R is aborting now ... Flavor: r-oldrel-macos-x86_64

Package dartR.captive

Current CRAN status: ERROR: 2, OK: 11

Version: 1.2.2
Check: whether package can be installed
Result: ERROR Installation failed. Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Package dartR.data

Current CRAN status: OK: 13

Package dartR.popgen

Current CRAN status: ERROR: 4, OK: 9

Version: 1.2.2
Check: package dependencies
Result: ERROR Package required but not available: ‘LEA’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.2.2
Check: package dependencies
Result: ERROR Package required but not available: ‘LEA’ Package suggested but not available for checking: ‘snpStats’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64

Package dartR.spatial

Current CRAN status: ERROR: 2, OK: 11

Version: 1.2.2
Check: whether package can be installed
Result: ERROR Installation failed. Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64

Package dartRverse

Current CRAN status: OK: 13

Package PopGenReport

Current CRAN status: OK: 13