Last updated on 2025-12-07 07:50:21 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| drord | 1 | 12 | ||
| drtmle | 1 | 12 | ||
| nlpred | 5 | 8 |
Current CRAN status: WARN: 1, OK: 12
Version: 1.0.1
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, OK: 12
Version: 1.1.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘SuperLearner’
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'gam'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 5, NOTE: 8
Version: 1.0.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘David Benkeser <benkeser@emory.edu>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘wine.Rd’:
https://doi.org/10.1016/j.dss.2009.05.016
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: Rd files
Result: NOTE
checkRd: (-1) dot-make_long_data.Rd:44: Lost braces; missing escapes or markup?
44 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)),
| ^
checkRd: (-1) dot-make_long_data_nested_cv.Rd:49: Lost braces; missing escapes or markup?
49 | training sample), psi (the value of this observations Psihat(P_{n,B_n}^0)),
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘SuperLearner’
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'prettydoc'
VignetteBuilder packages required for checking but not installed:
'knitr', 'rmarkdown'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘nlpred-Ex.R’ failed
The error most likely occurred in:
> ### Name: xgboost_wrapper
> ### Title: Wrapper for fitting eXtreme gradient boosting via 'xgboost'
> ### Aliases: xgboost_wrapper
>
> ### ** Examples
>
> # simulate data
> # make list of training data
> train_X <- data.frame(x1 = runif(50))
> train_Y <- rbinom(50, 1, plogis(train_X$x1))
> train <- list(Y = train_Y, X = train_X)
> # make list of test data
> test_X <- data.frame(x1 = runif(50))
> test_Y <- rbinom(50, 1, plogis(train_X$x1))
> test <- list(Y = test_Y, X = test_X)
> # fit xgboost
> xgb_wrap <- xgboost_wrapper(train = train, test = test)
Warning in throw_err_or_depr_msg("Parameter(s) have been removed from this function: ", :
Parameter(s) have been removed from this function: params, save_period. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
Error in xgboost::xgboost(data = xgmat, objective = "binary:logistic", :
argument "y" is missing, with no default
Calls: xgboost_wrapper ... <Anonymous> -> process.y.margin.and.objective -> NROW
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-windows-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/96s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlpred)
Loading required package: data.table
>
> test_check("nlpred")
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 /
Multistart 1 of 1 |
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Saving _problems/testWrappers-13.R
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testWrappers.R:12:3'): wrappers work ────────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `xgboost::xgboost(data = xgmat, objective = "binary:logistic", nrounds = ntrees, max_depth = max_depth, min_child_weight = minobspernode, eta = shrinkage, verbose = verbose, nthread = nthread, params = params, save_period = save_period)`: argument "y" is missing, with no default
Backtrace:
▆
1. └─nlpred (local) check_wrapper(paste0(wrap, "_wrapper"), test = test, train = train) at testWrappers.R:31:17
2. ├─base::do.call(wrapper, args = list(train = train, test = test)) at testWrappers.R:12:17
3. └─nlpred::xgboost_wrapper(train = `<list>`, test = `<list>`)
4. └─xgboost::xgboost(...)
5. └─xgboost:::process.y.margin.and.objective(...)
6. └─base::NROW(y)
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [22s/99s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlpred)
Loading required package: data.table
>
> test_check("nlpred")
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 /
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 |
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Saving _problems/testWrappers-13.R
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testWrappers.R:12:3'): wrappers work ────────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `xgboost::xgboost(data = xgmat, objective = "binary:logistic", nrounds = ntrees, max_depth = max_depth, min_child_weight = minobspernode, eta = shrinkage, verbose = verbose, nthread = nthread, params = params, save_period = save_period)`: argument "y" is missing, with no default
Backtrace:
▆
1. └─nlpred (local) check_wrapper(paste0(wrap, "_wrapper"), test = test, train = train) at testWrappers.R:31:17
2. ├─base::do.call(wrapper, args = list(train = train, test = test)) at testWrappers.R:12:17
3. └─nlpred::xgboost_wrapper(train = `<named list>`, test = `<named list>`)
4. └─xgboost::xgboost(...)
5. └─xgboost:::process.y.margin.and.objective(...)
6. └─base::NROW(y)
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘nlpred-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: xgboost_wrapper
> ### Title: Wrapper for fitting eXtreme gradient boosting via 'xgboost'
> ### Aliases: xgboost_wrapper
>
> ### ** Examples
>
> # simulate data
> # make list of training data
> train_X <- data.frame(x1 = runif(50))
> train_Y <- rbinom(50, 1, plogis(train_X$x1))
> train <- list(Y = train_Y, X = train_X)
> # make list of test data
> test_X <- data.frame(x1 = runif(50))
> test_Y <- rbinom(50, 1, plogis(train_X$x1))
> test <- list(Y = test_Y, X = test_X)
> # fit xgboost
> xgb_wrap <- xgboost_wrapper(train = train, test = test)
Warning in throw_err_or_depr_msg("Parameter(s) have been removed from this function: ", :
Parameter(s) have been removed from this function: params, save_period. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
Error in xgboost::xgboost(data = xgmat, objective = "binary:logistic", :
argument "y" is missing, with no default
Calls: xgboost_wrapper ... <Anonymous> -> process.y.margin.and.objective -> NROW
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cv_scrnp 5.512 0.26 7.938
Flavor: r-release-linux-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlpred)
Loading required package: data.table
>
> test_check("nlpred")
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 /
Multistart 1 of 1 |
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Multistart 1 of 1 |
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Saving _problems/testWrappers-13.R
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testWrappers.R:12:3'): wrappers work ────────────────────────────────
<getvarError/missingArgError/error/condition>
Error in `xgboost::xgboost(data = xgmat, objective = "binary:logistic", nrounds = ntrees, max_depth = max_depth, min_child_weight = minobspernode, eta = shrinkage, verbose = verbose, nthread = nthread, params = params, save_period = save_period)`: argument "y" is missing, with no default
Backtrace:
▆
1. └─nlpred (local) check_wrapper(paste0(wrap, "_wrapper"), test = test, train = train) at testWrappers.R:31:17
2. ├─base::do.call(wrapper, args = list(train = train, test = test)) at testWrappers.R:12:17
3. └─nlpred::xgboost_wrapper(train = `<list>`, test = `<list>`)
4. └─xgboost::xgboost(...)
5. └─xgboost:::process.y.margin.and.objective(...)
6. └─base::NROW(y)
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(nlpred)
Loading required package: data.table
>
> test_check("nlpred")
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 /
Multistart 1 of 1 |
Multistart 1 of 1 |
Multistart 1 of 1 |
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Saving _problems/testWrappers-13.R
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testWrappers.R:12:3'): wrappers work ────────────────────────────────
Error in `xgboost::xgboost(data = xgmat, objective = "binary:logistic", nrounds = ntrees, max_depth = max_depth, min_child_weight = minobspernode, eta = shrinkage, verbose = verbose, nthread = nthread, params = params, save_period = save_period)`: argument "y" is missing, with no default
Backtrace:
▆
1. └─nlpred (local) check_wrapper(paste0(wrap, "_wrapper"), test = test, train = train) at testWrappers.R:31:17
2. ├─base::do.call(wrapper, args = list(train = train, test = test)) at testWrappers.R:12:17
3. └─nlpred::xgboost_wrapper(train = `<list>`, test = `<list>`)
4. └─xgboost::xgboost(...)
5. └─xgboost:::process.y.margin.and.objective(...)
6. └─base::NROW(y)
[ FAIL 1 | WARN 4 | SKIP 0 | PASS 40 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64