Last updated on 2026-10-24 01:51:58 CEST.
| Package | OK | NOTE | ERROR |
|---|---|---|---|
| actuaRE | 8 | 5 | |
| CalibrationCurves | 12 | 1 |
Current CRAN status: OK: 8, NOTE: 5
Version: 1.0.1
Check: dependencies in R code
Result: NOTE
Base package in Suggests/Enhances imported in NAMESPACE:
‘utils’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.0.1
Check: Rd contents
Result: NOTE
Rd files without \usage:
‘fixef.Rd’ ‘ranef.Rd’
\arguments should not be documented without \usage.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 12, ERROR: 1
Version: 3.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard testthat setup.
> # It is recommended that you do not modify it.
> #
> # Where should you do your testing?
> # Learn more about testing at https://r-pkgs.org/testing-basics.html
>
> library(testthat)
> library(CalibrationCurves)
Loading required package: rms
Loading required package: Hmisc
Attaching package: 'Hmisc'
The following object is masked from 'package:testthat':
describe
The following objects are masked from 'package:base':
format.pval, units
Loading required package: ggplot2
>
> test_check("CalibrationCurves")
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Waiting for profiling to be done...
Saving _problems/test-print-methods-49.R
Saving _problems/test-valProbSurvival-12.R
Saving _problems/test-valProbSurvival-27.R
Saving _problems/test-valProbSurvival-54.R
Saving _problems/test-valProbSurvival-66.R
Saving _problems/test-valProbSurvival-76.R
[ FAIL 6 | WARN 0 | SKIP 32 | PASS 105 ]
══ Skipped tests (32) ══════════════════════════════════════════════════════════
• On CRAN (32): 'test-print-methods.R:58:3', 'test-valProbCluster.R:20:3',
'test-valProbCluster.R:33:3', 'test-valProbCluster.R:44:3',
'test-valProbCluster.R:71:3', 'test-valProbCluster.R:81:3',
'test-valProbCluster.R:95:3', 'test-valProbCluster.R:109:3',
'test-valProbCluster.R:121:3', 'test-valProbCluster.R:134:3',
'test-valProbCluster.R:147:3', 'test-valProbCluster.R:159:3',
'test-valProbCluster.R:177:3', 'test-valProbCluster.R:195:3',
'test-valProbCluster.R:207:3', 'test-valProbCluster.R:218:3',
'test-valProbCluster.R:233:3', 'test-valProbCluster.R:243:3',
'test-valProbCluster.R:255:3', 'test-valProbCluster.R:266:3',
'test-valProbCluster.R:283:3', 'test-valProbCluster.R:295:3',
'test-valProbCluster.R:306:3', 'test-valProbCluster.R:317:3',
'test-valProbCluster.R:334:3', 'test-valProbCluster.R:345:3',
'test-valProbCluster.R:356:3', 'test-valProbCluster.R:374:3',
'test-valProbCluster.R:397:3', 'test-valProbCluster.R:413:3',
'test-valProbCluster.R:440:3', 'test-valProbCluster.R:451:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-print-methods.R:49:3'): print.SurvivalCalibrationCurve works and returns invisibly ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─CalibrationCurves::valProbSurvival(sFit, testDataSurvival, plotCal = "none") at test-print-methods.R:49:3
2. ├─stats::predict(fit, newdata = valdata, type = "lp")
3. └─survival:::predict.coxph(fit, newdata = valdata, type = "lp")
4. └─stats::delete.response(Terms)
5. └─stats (local) off(a$specials[[i]])
── Error ('test-valProbSurvival.R:12:3'): valProbSurvival returns correct structure ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─CalibrationCurves::valProbSurvival(sFit, testDataSurvival, plotCal = "none") at test-valProbSurvival.R:12:3
2. ├─stats::predict(fit, newdata = valdata, type = "lp")
3. └─survival:::predict.coxph(fit, newdata = valdata, type = "lp")
4. └─stats::delete.response(Terms)
5. └─stats (local) off(a$specials[[i]])
── Error ('test-valProbSurvival.R:27:3'): valProbSurvival stats contain expected components ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─CalibrationCurves::valProbSurvival(sFit, testDataSurvival, plotCal = "none") at test-valProbSurvival.R:27:3
2. ├─stats::predict(fit, newdata = valdata, type = "lp")
3. └─survival:::predict.coxph(fit, newdata = valdata, type = "lp")
4. └─stats::delete.response(Terms)
5. └─stats (local) off(a$specials[[i]])
── Failure ('test-valProbSurvival.R:52:3'): valProbSurvival works with plotCal = 'base' ──
Expected `valProbSurvival(sFit, testDataSurvival, plotCal = "base")` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
── Failure ('test-valProbSurvival.R:64:3'): valProbSurvival works with plotCal = 'ggplot' ──
Expected `valProbSurvival(sFit, testDataSurvival, plotCal = "ggplot")` not to throw any errors.
Actually got a <subscriptOutOfBoundsError> with message:
subscript out of bounds
── Error ('test-valProbSurvival.R:76:3'): valProbSurvival respects timeHorizon argument ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─CalibrationCurves::valProbSurvival(...) at test-valProbSurvival.R:76:3
2. ├─stats::predict(fit, newdata = valdata, type = "lp")
3. └─survival:::predict.coxph(fit, newdata = valdata, type = "lp")
4. └─stats::delete.response(Terms)
5. └─stats (local) off(a$specials[[i]])
[ FAIL 6 | WARN 0 | SKIP 32 | PASS 105 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘CalibrationCurves.Rmd’ using rmarkdown
Quitting from CalibrationCurves.Rmd:287-294 [unnamed-chunk-15]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. └─CalibrationCurves::valProbSurvival(...)
2. ├─stats::predict(fit, newdata = valdata, type = "lp")
3. └─survival:::predict.coxph(fit, newdata = valdata, type = "lp")
4. └─stats::delete.response(Terms)
5. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CalibrationCurves.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘CalibrationCurves.Rmd’
SUMMARY: processing the following file failed:
‘CalibrationCurves.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc