Last updated on 2025-12-07 07:50:20 CET.
| Package | WARN | NOTE | OK |
|---|---|---|---|
| filematrix | 1 | 12 | |
| MatrixEQTL | 13 | ||
| shiftR | 1 | 12 |
Current CRAN status: WARN: 1, OK: 12
Version: 1.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: NOTE: 13
Version: 2.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Andrey A Shabalin <andrey.shabalin@gmail.com>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
Package CITATION file contains call(s) to old-style citEntry(). Please
use bibentry() instead.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 2.3
Check: Rd files
Result: NOTE
checkRd: (-1) Matrix_eQTL_main.Rd:31: Lost braces; missing escapes or markup?
31 | {genepos} in the call of \code{Matrix_eQTL_main} function.
| ^
checkRd: (-1) Matrix_eQTL_main.Rd:35: Lost braces; missing escapes or markup?
35 | the data frames \code{snpspos} and {genepos}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 2.3
Check: Rd files
Result: NOTE
checkRd: (-1) Matrix_eQTL_main.Rd:31: Lost braces; missing escapes or markup?
31 | {genepos} in the call of \code{Matrix_eQTL_main} function.
| ^
checkRd: (-1) Matrix_eQTL_main.Rd:35: Lost braces; missing escapes or markup?
35 | the data frames \code{snpspos} and {genepos}.
| ^
checkRd: (-1) snpsloc.Rd:9-14: Only 4 columns allowed in this table (row 1 has 3)
checkRd: (-1) snpsloc.Rd:9-14: Only 4 columns allowed in this table (row 2 has 3)
checkRd: (-1) snpsloc.Rd:9-14: Only 4 columns allowed in this table (row 3 has 3)
checkRd: (-1) snpsloc.Rd:9-14: Only 4 columns allowed in this table (row 4 has 3)
Flavor: r-devel-windows-x86_64
Current CRAN status: WARN: 1, NOTE: 12
Version: 1.5
Check: Rd files
Result: NOTE
checkRd: (-1) shiftrPrepare.Rd:37: Lost braces
37 | See code{\link{shiftrPermBinary}} function and the respective example.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.5
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.5
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc