Last updated on 2026-11-09 01:52:34 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.0 | 41.77 | 117.87 | 159.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.9.0 | 32.39 | 50.72 | 83.11 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9.0 | 31.00 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.0 | 37.00 | 84.89 | 121.89 | OK | |
| r-devel-windows-x86_64 | 0.9.0 | 58.00 | 237.00 | 295.00 | OK | |
| r-patched-linux-x86_64 | 0.9.0 | OK | ||||
| r-release-linux-x86_64 | 0.9.0 | 44.40 | 106.07 | 150.47 | OK | |
| r-release-macos-arm64 | 0.9.0 | 10.00 | 32.00 | 42.00 | OK | |
| r-release-macos-x86_64 | 0.9.0 | 31.00 | 130.00 | 161.00 | OK | |
| r-release-windows-x86_64 | 0.9.0 | 57.00 | 173.00 | 230.00 | OK | |
| r-oldrel-macos-arm64 | 0.9.0 | 12.00 | 44.00 | 56.00 | OK | |
| r-oldrel-macos-x86_64 | 0.9.0 | 30.00 | 191.00 | 221.00 | OK | |
| r-oldrel-windows-x86_64 | 0.9.0 | 74.00 | 211.00 | 285.00 | OK |
Version: 0.9.0
Check: examples
Result: ERROR
Running examples in ‘VCFArrow-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: assess_vcf_coverage
> ### Title: assess_vcf_coverage
> ### Aliases: assess_vcf_coverage
>
> ### ** Examples
>
> f <- system.file("extdata", "vaillantii_discosnp_sub.vcf.gz",
+ package = "VCFArrow")
> vcf <- read_vcf(f) |> set_vcf_groups(dirname(f))
ℹ VCF is being read in chunks of 50000 variants
Warning in write_ipc_impl(x = x, sink = sink, version = version, chunk_size = chunk_size, :
write_feather(version = 2) has been superseded by write_ipc_file().
Error: This build of the arrow package does not support Datasets
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘VCFArrow.Rmd’ using rmarkdown
Quitting from VCFArrow.Rmd:67-90 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! This build of the arrow package does not support Datasets
---
Backtrace:
▆
1. ├─VCFArrow::set_vcf_groups(...)
2. └─VCFArrow::read_vcf(...)
3. └─arrow::open_dataset(tmp_dir, format = "feather")
4. └─arrow:::stop_if_no_datasets()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'VCFArrow.Rmd' failed with diagnostics:
This build of the arrow package does not support Datasets
--- failed re-building ‘VCFArrow.Rmd’
SUMMARY: processing the following file failed:
‘VCFArrow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc