Last updated on 2026-11-09 01:52:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 7.25 | 194.73 | 201.98 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 4.52 | 124.31 | 128.83 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 135.54 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 141.83 | OK | |||
| r-devel-windows-x86_64 | 0.3.0 | 10.00 | 189.00 | 199.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | OK | ||||
| r-release-linux-x86_64 | 0.3.0 | 6.30 | 184.51 | 190.81 | OK | |
| r-release-macos-arm64 | 0.3.0 | 2.00 | 53.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 0.3.0 | 6.00 | 330.00 | 336.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 13.00 | 287.00 | 300.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | 3.00 | 58.00 | 61.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.0 | 6.00 | 329.00 | 335.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.0 | 14.00 | 248.00 | 262.00 | OK |
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/118s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(OmopIndices)
>
> test_check("OmopIndices")
Saving _problems/test-polypharmacy-50.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 90 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-polypharmacy.R:2:3'): polypharmacy returns zeros for empty drug eras and rejects multiple windows ──
Error in `parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads))`: Cannot call parquet___arrow___ArrowReaderProperties__Make(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-polypharmacy.R:2:3
2. │ └─base::withCallingHandlers(...)
3. ├─OmopIndices:::copyCdm(...)
4. │ ├─omopgenerics::insertCdmTo(cdm = cdm, to = to) at ./setup.R:49:5
5. │ └─CDMConnector:::insertCdmTo.db_cdm(cdm = cdm, to = to)
6. │ └─omopgenerics::assertClass(cdm, "cdm_reference")
7. │ ├─omopgenerics:::checkEmpty(...)
8. │ ├─omopgenerics:::checkClass(...)
9. │ ├─omopgenerics:::checkLength(...)
10. │ ├─omopgenerics:::checkNull(createCheckObject(x), null)
11. │ └─omopgenerics:::createCheckObject(x)
12. ├─omock::mockCdmFromTables(...)
13. │ └─omopgenerics::validateCdmArgument(cdm = cdm)
14. │ └─omopgenerics::assertClass(...)
15. │ ├─omopgenerics:::checkEmpty(...)
16. │ ├─omopgenerics:::checkClass(...)
17. │ ├─omopgenerics:::checkLength(...)
18. │ ├─omopgenerics:::checkNull(createCheckObject(x), null)
19. │ └─omopgenerics:::createCheckObject(x)
20. └─omock::mockCdmReference(vocabularySet = "GiBleed")
21. └─omock::mockVocabularySet(...)
22. └─omock:::readTables(tmpFolder, cv, vocab = T)
23. ├─omock:::castColumns(...)
24. │ ├─dplyr::filter(...)
25. │ ├─dplyr:::filter.data.frame(...)
26. │ │ └─dplyr:::filter_impl(...)
27. │ │ └─dplyr:::dplyr_quosures(...)
28. │ │ └─rlang::quos(..., .ignore_empty = "all")
29. │ └─base::colnames(x)
30. │ └─base::is.data.frame(x)
31. └─arrow::read_parquet(file = tables[[nm]])
32. ├─ParquetFileReader$create(file, props = props, mmap = mmap, ...)
33. │ └─arrow:::assert_is(props, "ParquetArrowReaderProperties")
34. │ ├─assertthat::assert_that(inherits(object, class), msg = msg)
35. │ │ └─assertthat::see_if(..., env = env, msg = msg)
36. │ │ ├─base::tryCatch(...)
37. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
38. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
39. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
40. │ │ └─base::eval(assertion, env)
41. │ │ └─base::eval(assertion, env)
42. │ └─base::inherits(object, class)
43. └─ParquetArrowReaderProperties$create()
44. └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 90 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc