Last updated on 2026-11-09 01:52:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 1.68 | 105.48 | 107.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 1.37 | 42.17 | 43.54 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | OK | ||||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 73.15 | OK | |||
| r-devel-windows-x86_64 | 1.1.0 | 5.00 | 116.00 | 121.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | OK | ||||
| r-release-linux-x86_64 | 1.1.0 | 1.55 | 97.02 | 98.57 | OK | |
| r-release-macos-arm64 | 1.1.0 | 1.00 | 39.00 | 40.00 | OK | |
| r-release-macos-x86_64 | 1.1.0 | 1.00 | 150.00 | 151.00 | OK | |
| r-release-windows-x86_64 | 1.1.0 | 3.00 | 109.00 | 112.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.0 | 1.00 | 47.00 | 48.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.0 | 1.00 | 166.00 | 167.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.0 | 4.00 | 134.00 | 138.00 | OK |
Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘bridging_cross-product.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘bridging_cross-product.Rmd’
--- re-building ‘bridging_introduction.Rmd’ using rmarkdown
Quitting from bridging_introduction.Rmd:154-174 [preprocessing]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dplyr::collect()`:
! Failed to collect lazy table.
Caused by error in `duckdb_result()`:
! Invalid Error: std::exception
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─OlinkAnalyze::check_npx(df = npx_data1)
2. └─OlinkAnalyze:::check_npx_all_na_assays(df = df, col_names = check_npx_out_lst[["col_names"]])
3. ├─base::sort(...)
4. ├─dplyr::pull(...)
5. ├─dplyr::collect(...)
6. └─dbplyr:::collect.tbl_sql(...)
7. ├─base::withCallingHandlers(...)
8. ├─dbplyr::db_collect(...)
9. └─dbplyr:::db_collect.DBIConnection(...)
10. ├─DBI::dbSendQuery(con, sql)
11. └─DBI::dbSendQuery(con, sql)
12. └─duckdb (local) .local(conn, statement, ...)
13. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bridging_introduction.Rmd' failed with diagnostics:
Failed to collect lazy table.
Caused by error in `duckdb_result()`:
! Invalid Error: std::exception
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘bridging_introduction.Rmd’
--- re-building ‘lod.Rmd’ using rmarkdown
Quitting from lod.Rmd:83-177 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dplyr::collect()`:
! Failed to collect lazy table.
Caused by error in `duckdb_result()`:
! Invalid Error: std::exception
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─OlinkAnalyze::check_npx(df = npx_data1)
2. └─OlinkAnalyze:::check_npx_all_na_assays(df = df, col_names = check_npx_out_lst[["col_names"]])
3. ├─base::sort(...)
4. ├─dplyr::pull(...)
5. ├─dplyr::collect(...)
6. └─dbplyr:::collect.tbl_sql(...)
7. ├─base::withCallingHandlers(...)
8. ├─dbplyr::db_collect(...)
9. └─dbplyr:::db_collect.DBIConnection(...)
10. ├─DBI::dbSendQuery(con, sql)
11. └─DBI::dbSendQuery(con, sql)
12. └─duckdb (local) .local(conn, statement, ...)
13. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'lod.Rmd' failed with diagnostics:
Failed to collect lazy table.
Caused by error in `duckdb_result()`:
! Invalid Error: std::exception
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘lod.Rmd’
--- re-building ‘outlier_exclusion.Rmd’ using rmarkdown
Quitting from outlier_exclusion.Rmd:37-87 [Outlier_data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dplyr::collect()`:
! Failed to collect lazy table.
Caused by error in `duckdb_result()`:
! Invalid Error: std::exception
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─OlinkAnalyze::check_npx(df = npx_data1)
2. └─OlinkAnalyze:::check_npx_all_na_assays(df = df, col_names = check_npx_out_lst[["col_names"]])
3. ├─base::sort(...)
4. ├─dplyr::pull(...)
5. ├─dplyr::collect(...)
6. └─dbplyr:::collect.tbl_sql(...)
7. ├─base::withCallingHandlers(...)
8. ├─dbplyr::db_collect(...)
9. └─dbplyr:::db_collect.DBIConnection(...)
10. ├─DBI::dbSendQuery(con, sql)
11. └─DBI::dbSendQuery(con, sql)
12. └─duckdb (local) .local(conn, statement, ...)
13. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'outlier_exclusion.Rmd' failed with diagnostics:
Failed to collect lazy table.
Caused by error in `duckdb_result()`:
! Invalid Error: std::exception
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘outlier_exclusion.Rmd’
--- re-building ‘plate_randomizer.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘plate_randomizer.Rmd’
SUMMARY: processing the following files failed:
‘bridging_introduction.Rmd’ ‘lod.Rmd’ ‘outlier_exclusion.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc