CRAN Package Check Results for Package Karen

Last updated on 2026-09-09 05:51:27 CEST.

Check Details

Version: 1.0
Check: Rd files
Result: NOTE checkRd: (-1) get.fit.Rd:46: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:47: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:48-49: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:50-51: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:52-54: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:57-60: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:61-62: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:63-64: Lost braces in \itemize; meant \describe ? checkRd: (-1) get.fit.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.fit.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.sim.trajectories.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) get.sim.trajectories.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0
Check: examples
Result: ERROR Running examples in 'Karen-Ex.R' failed The error most likely occurred in: > ### Name: get.fit > ### Title: Fit the state-space model to a clonal tracking dataset > ### Aliases: get.fit > > ### ** Examples > > rcts <- c("HSC->T", ## reactions + "HSC->M", + "T->0", + "M->0") > > cnstr <- c("theta\\[\\'HSC->T\\'\\]=(theta\\[\\'T->0\\'\\])", + "theta\\[\\'HSC->M\\'\\]=(theta\\[\\'M->0\\'\\])") > latsts <- "HSC" ## latent cell types > > ctps <- unique(setdiff(c(sapply(rcts, function(r){ ## all cell types + as.vector(unlist(strsplit(r, split = "->", fixed = TRUE))) + }, simplify = "array")), c("0", "1"))) > > > > Y0 <- Y_CT$WAS[,setdiff(ctps,"HSC"),] > topClones <- 2 > Y0 <- Y0[,,names(head(sort(apply(Y0!=0, 3, sum), decreasing = TRUE), topClones)),drop=FALSE] > > > ## cluster parameters: > cl <- parallel::makeCluster(2, type = "PSOCK") Error in serverSocket(port = port) : creation of server socket failed: port 11835 cannot be opened Calls: <Anonymous> -> makePSOCKcluster -> serverSocket Execution halted Flavor: r-oldrel-windows-x86_64