CRAN Package Check Results for Package Eunomia

Last updated on 2026-08-19 08:53:48 CEST.

Check Details

Version: 2.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/46s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(Eunomia) > test_check("Eunomia") trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-DBI-2.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-DBI-13.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-EunomiaData-9.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/Synthea27Nj/Synthea27Nj_5.4.zip' Saving _problems/test-EunomiaData-14.R adding: home/hornik/tmp/scratch/RtmpBFTgxc/file14c47440f86c57somefile.txt (stored 0%) trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-9.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-13.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-21.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-30.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-36.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-47.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-54.R trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Saving _problems/test-basic-75.R [ FAIL 12 | WARN 12 | SKIP 0 | PASS 5 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-DBI.R:2:3'): dbConnect works with sqlite ─────────────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:2:3 2. ├─DBI::dbConnect(...) 3. │ └─RSQLite (local) .local(drv, ...) 4. │ └─base::stopifnot(length(dbname) == 1, !is.na(dbname)) 5. └─Eunomia::getDatabaseFile(...) 6. └─Eunomia::downloadEunomiaData(...) 7. └─utils::download.file(...) ── Error ('test-DBI.R:13:3'): dbConnect works with duckdb ────────────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. ├─DBI::dbConnect(...) at test-DBI.R:13:3 2. ├─DBI::dbConnect(...) 3. │ └─duckdb (local) .local(drv, ...) 4. │ └─duckdb:::path_normalize(dbdir) 5. └─Eunomia::getDatabaseFile(...) 6. └─Eunomia::downloadEunomiaData(...) 7. └─utils::download.file(...) ── Error ('test-EunomiaData.R:9:3'): Overwrite test for downloadEunomiaData ──── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. └─Eunomia::downloadEunomiaData(datasetName = "GiBleed", overwrite = T) at test-EunomiaData.R:9:3 2. └─utils::download.file(...) ── Error ('test-EunomiaData.R:14:3'): Eunomia works with 5.4 ─────────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/Synthea27Nj/Synthea27Nj_5.4.zip' Backtrace: ▆ 1. └─Eunomia::getDatabaseFile(...) at test-EunomiaData.R:14:3 2. └─Eunomia::downloadEunomiaData(...) 3. └─utils::download.file(...) ── Failure ('test-basic.R:9:3'): Dataset not downloaded and not loaded into SQLite ── `getDatabaseFile(datasetName = "GiBleed")` threw an error. Message: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Class: simpleError/error/condition Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-basic.R:9:3 2. │ └─testthat:::quasi_capture(...) 3. │ ├─testthat (local) .capture(...) 4. │ │ └─base::withCallingHandlers(...) 5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 6. └─Eunomia::getDatabaseFile(datasetName = "GiBleed") 7. └─Eunomia::downloadEunomiaData(...) 8. └─utils::download.file(...) ── Error ('test-basic.R:13:3'): Dataset downloaded but not loaded into SQLite ── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. └─Eunomia::downloadEunomiaData(datasetName = "GiBleed") at test-basic.R:13:3 2. └─utils::download.file(...) ── Error ('test-basic.R:21:3'): Get connection details ───────────────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. └─Eunomia::getEunomiaConnectionDetails() at test-basic.R:21:3 2. └─Eunomia::getDatabaseFile(...) 3. └─Eunomia::downloadEunomiaData(...) 4. └─utils::download.file(...) ── Error ('test-basic.R:30:3'): Connect ──────────────────────────────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. ├─DatabaseConnector::connect(getEunomiaConnectionDetails()) at test-basic.R:30:3 2. └─Eunomia::getEunomiaConnectionDetails() 3. └─Eunomia::getDatabaseFile(...) 4. └─Eunomia::downloadEunomiaData(...) 5. └─utils::download.file(...) ── Error ('test-basic.R:36:3'): Table names and column names case ────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. ├─DatabaseConnector::connect(getEunomiaConnectionDetails()) at test-basic.R:36:3 2. └─Eunomia::getEunomiaConnectionDetails() 3. └─Eunomia::getDatabaseFile(...) 4. └─Eunomia::downloadEunomiaData(...) 5. └─utils::download.file(...) ── Error ('test-basic.R:47:3'): Query ────────────────────────────────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. ├─DatabaseConnector::connect(getEunomiaConnectionDetails()) at test-basic.R:47:3 2. └─Eunomia::getEunomiaConnectionDetails() 3. └─Eunomia::getDatabaseFile(...) 4. └─Eunomia::downloadEunomiaData(...) 5. └─utils::download.file(...) ── Error ('test-basic.R:54:3'): Cohort construction ──────────────────────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. └─Eunomia::getEunomiaConnectionDetails() at test-basic.R:54:3 2. └─Eunomia::getDatabaseFile(...) 3. └─Eunomia::downloadEunomiaData(...) 4. └─utils::download.file(...) ── Error ('test-basic.R:75:3'): deprecated arguments in createCohorts ────────── Error in `utils::download.file(url = paste(baseUrl, datasetName, zipName, sep = "/"), destfile = file.path(pathToData, zipName))`: cannot open URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip' Backtrace: ▆ 1. └─Eunomia::getEunomiaConnectionDetails() at test-basic.R:75:3 2. └─Eunomia::getDatabaseFile(...) 3. └─Eunomia::downloadEunomiaData(...) 4. └─utils::download.file(...) [ FAIL 12 | WARN 12 | SKIP 0 | PASS 5 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang