b120691cd53a5b146c02ce05f12b0bc2 *DESCRIPTION
bc13263f178de2543ca28f6e33f77779 *LICENSE
3f0fc37e334db08c20cb0d979de64956 *NAMESPACE
3c5450dfa496756b6213afbd5e623266 *NEWS.md
05afc813fc93d73d447814001f158cb1 *R/backend_helpers.R
d3401ec4a93ce374839e61da96e77d45 *R/csts_methods.R
114339784e817833daebf774d8061e30 *R/data.R
9abb57f33c6a6ba0b4c6200d65e4aaa6 *R/dcst_landmark_pipeline.R
03ed32c8d3818f6e0309573646eeaa69 *R/dominant_features.R
9066c7fc24cb2e77386b707ea897f968 *R/filter_asv.R
1a7dc8500c217ee70df27f6f57a63002 *R/fit.R
ddf20cd009e1dec9bbad71fb5640acc9 *R/fit_contracts.R
55549d61021b0435748415ec9694e3dc *R/hypercube_embedding.R
cc9cc141f4627ba6fa21acc2526831df *R/imports.R
516c5e825be77352397f77ad68441520 *R/label_format.R
52cc67f3874b6f9bfdd6462766b380c3 *R/landmarks.R
7c06530ac1a88472f03cc498a195c705 *R/lineage_nodes.R
98d114d1ff57c4e59f513be98124b1bc *R/linf-package.R
48e45f5fa943660f88b89b3b3f8f4ab0 *R/normalize.R
a1a04e9dc9a94d99ccfe6eb2cc16d640 *R/policy_helpers.R
402e7b646cc3b2489cbac3ac6765bfd6 *R/policy_views.R
325996e057cd388287814126423eba7f *R/refine.R
81e00e6c1c6cf72d1a8462e97bb8facf *R/transfer_dcsts.R
83fa8a5717558e67641c23419d1c8bdd *R/udcst_graph.R
f9bb3cbd87ae307122f7cb404dac3739 *R/udcsts.R
2fb2ff8e2d4a1668ff7245e15067900b *R/utils.R
0a0cc224baf84cd63bca7ace277bb750 *R/validate_fit.R
3d8e7204d6cda12cc011811c831613ed *README.md
38ab1962eec6eab5c520a4502634d7b6 *build/partial.rdb
67c6eaf6960aba605185a6a34b4330f5 *build/vignette.rds
0381d35318e5cd2717900780d7d3fa8b *data/agp_gut.rda
a5945e0635b18483312b694e98ace456 *data/valencia13k_dcst_depth2_merged.rda
d154a8893aef7ece3099ad8874eccc43 *data/valencia13k_dcst_depth3_merged.rda
59bc0d3216e2c8b9aa0fb984f13ac572 *data/valencia2k.rda
ac48dac215569ba9e0f6fbdd705ea7ff *data/valencia_linf_hypercube_1k.rda
218fbf4baa3571e547ab16dfe00623c8 *inst/CITATION
80226299542ba3fc443cf9604d338358 *inst/DATA_MANIFEST.csv
d4c75852adb873bec1bc757c5bb25e53 *inst/DATA_PROVENANCE.md
ec5b0ee817856eff5eeba67ec4f6a439 *inst/PERFORMANCE.md
3fea644ca88837f797e7aa8bf5b33bf1 *inst/WORDLIST
3f60f3bc11de87f3b9d42b921eaca33c *inst/doc/example-datasets.R
69f1994383be495fed4cbeba97e7b840 *inst/doc/example-datasets.Rmd
3c501a0346f927b2cfd0dcbd285012af *inst/doc/example-datasets.html
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bdc58d35178ad91d2c1c58fb3242b07d *inst/doc/linf-vaginal.Rmd
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891673b40894447bc31f3ef853d4c7a1 *inst/extdata/agp_gut_counts.csv.gz
46bf11b0b95ad39586b8d97506a1b458 *inst/extdata/agp_gut_meta.csv
456ee6a93f96893993f38776ac41f62d *inst/extdata/agp_gut_taxa.txt
8762e245106edb4d2f0869e15e78dea8 *man/agp_gut.Rd
fcda6f9c861ae9a343d89568cab996e3 *man/dcst.view.Rd
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66c15457b12ce88ce9254feb45884bfe *man/linf-package.Rd
15190a96e3ea94becec1482fdcebcfc0 *man/linf.csts.Rd
b46567428227d6f17a1f5a043010e59b *man/linf.dcst.landmark.pipeline.Rd
e055b15771064bfffa24897c219809dd *man/linf.dominant.features.Rd
ebbdb5793689e2a61d171ef5b2343aa3 *man/linf.feature.labels.Rd
b44b49b6d80f0f1d25b190bc4b9ca4b7 *man/linf.hypercube.embedding.Rd
2c2e4960d18397ef7dadab6bce00e7b5 *man/linf.landmarks.Rd
901ebc6d8f10ef706fc24b297820fdf7 *man/linf.udcst.graph.Rd
e16ed4ab7ee5f45709bd80fba5fc6099 *man/linf.udcsts.Rd
4abc28646107200cf37458b05df84195 *man/normalize.linf.Rd
70973f9868c248b90f3a82cebee296c0 *man/print.linf.csts.Rd
1d96418943c5bc17a71fa4e43ea9e720 *man/refine.linf.csts.Rd
03c09e70088e7099a60aa9385bff1416 *man/summary.linf.csts.Rd
948c4b0e146a6bbe0c7f31428b5add8a *man/transfer.dcsts.Rd
976e6ce32c75dbaa7295d33fd408aa9c *man/valencia13k_dcst_depth2_merged.Rd
c8c4e6fa5537a2a11f003df75f230476 *man/valencia13k_dcst_depth3_merged.Rd
05e20bc756d02961999708fe38cd1ecd *man/valencia2k.Rd
30ab54ed65b86348ad3fe2ae88ba69bb *man/valencia_linf_hypercube_1k.Rd
04a7502dbd35c73d550f280fc6cf4f3f *tests/testthat.R
fed38b73a6e4412016aa57dba4b47131 *tests/testthat/test-api-cleanup.R
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0d18a038e65a1bf70274da647209c2d1 *tests/testthat/test-data-provenance.R
71c06de621303dea7e06049cb3eb51c0 *tests/testthat/test-dcst-landmark-pipeline.R
724393ac3ecd160f4dff97021a9ae6f1 *tests/testthat/test-fit-contracts.R
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8c0a7a00913fe17d3e714d8fee11763e *tests/testthat/test-label-formatting.R
369737293af85246a8dec210eb7ee138 *tests/testthat/test-landmark-identities.R
426066e11b56ca4d129624e817dadecc *tests/testthat/test-landmarks.R
b38dc82fcbbe8efb09784818d3eb762a *tests/testthat/test-lineage-nodes.R
6be015fb51b601b405f676d1fe789ecd *tests/testthat/test-normalization-dominance-fit.R
260b3a1f7afc74dec87a6840745dce3b *tests/testthat/test-public-terminology.R
d484492403bcd1c5a598a701b71112eb *tests/testthat/test-sparse-backend.R
7572d34c2d7826f2a041f793c3a7480d *tests/testthat/test-summary-accounting.R
cf1c4ac86a386da9a0b65b9d1557f2cc *tests/testthat/test-transfer-dcsts.R
70c7d6e5c1496be2efd8e29aed8a9ef7 *tests/testthat/test-transfer-diagnostics.R
f61e1053c8c491b1cfcefb150f04d7e0 *tests/testthat/test-transfer-tree-support.R
c2766ee9c962da79fe401295c8aa5cc9 *tests/testthat/test-udcst-graph.R
685117397e57fdddde7b9e0e0fbdae87 *tests/testthat/test-udcsts.R
69f1994383be495fed4cbeba97e7b840 *vignettes/example-datasets.Rmd
e6990351d0ef47b934d8b42156e8fe39 *vignettes/function-guide.Rmd
4d9cf7c522869db9ac7eb5795354df67 *vignettes/linf-intro.Rmd
bdc58d35178ad91d2c1c58fb3242b07d *vignettes/linf-vaginal.Rmd
