e752243cdc8a9467d3eddff4f6d968b9 *DESCRIPTION
d32239bcb673463ab874e80d47fae504 *LICENSE
3297f9c274bcc8a3fdc3a7a129be4ea9 *NAMESPACE
df7376743d71e0f1944cd9968e070070 *R/RcppExports.R
43623221ee5624f090a6d794f3ad79e6 *R/calc_act.R
1f05af900068c8bd5405067b86b3c43a *R/calc_ess.R
f053653b4fd1b9465efd8004cc2de037 *R/calc_esses.R
571220ef2e61f7722cc1dc20accfc4c9 *R/calc_geom_mean.R
f225316dbae8e350e82fd1200533c878 *R/calc_hpd_interval.R
ca8f6b3841188bef6ddadcbdf11b5942 *R/calc_mode.R
132f7758881def78fd077c5c212c8336 *R/calc_stderr_mean.R
94d50332000c982ee3b1df6428cc9cc2 *R/calc_summary_stats.R
600f58f1f65733b4a2f7ccbc293fe791 *R/count_trees_in_file.R
78925331bf9fa3741577ed79c8a57877 *R/cs_std_dev.R
54fb55220ced5419e71fde4cd24b3199 *R/default_params_doc.R
05eaaa6c8c48e83bdeaf836936ba994a *R/extract_operators_lines.R
e182a238b8c72b11c2a875119d0d023e *R/files_exist.R
87e42503ad23f20d008e02002c7850b3 *R/get_path.R
ac4db029930394548fea794d125d483f *R/get_paths.R
6afdc768e5a45e8c138a453d83439583 *R/is_posterior.R
1fe1d33c1a8abb926fb872438ed42abd *R/is_trees_posterior.R
8230de01da500ac26596cb01986cc6ac *R/parse_beast_log.R
49c006ed037803fb70ef1cb3804d7c02 *R/parse_beast_output_files.R
26107061b3e9efa221a9902d5009d219 *R/parse_beast_posterior.R
5313c1d0f5f15e18f604646ac2113c7f *R/parse_beast_state.R
4bfbf8707919c2c8f6e0f97d6efe9ff3 *R/parse_beast_trees.R
8d240427757ee841aed2f486b2535caa *R/remove_burn_in.R
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ead3b01dcdb4319e353163891bede73a *R/save_beast_estimates.R
d574e798c04f81043665d60dd3c38f7c *R/save_beast_trees.R
5883010592b6c54dc94e2d2334ba312b *R/tracerer.R
f834726a988323b797d044df10b32604 *build/vignette.rds
604d69ff7d5954219736e01c41d18e48 *inst/CITATION
cda3c5fdd0d31785a6a0b35412a1185a *inst/WORDLIST
62007388bde561cf9d56d2520059c48e *inst/doc/demo.R
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0542f02c6d4aea94a15ae7a7af64af2a *inst/doc/demo.html
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3b024a9ad9e6e28be76783920a2c2688 *inst/extdata/anthus_2_4.log
ed473df6c85bcede8fa60a1f8230b30c *inst/extdata/anthus_2_4.state
107b03e0c328c1d2735b8f35d0fe0b01 *inst/extdata/anthus_2_4.xml
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045f10431fb1a789198c59fb5e4efbdc *inst/extdata/anthus_2_4_b.trees
0eedfd95a1fff834d513246b4e4624e2 *inst/extdata/anthus_aco.fas
93d45a2f0c0145ebfebdedeb073025f1 *inst/extdata/anthus_nd2.fas
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346226afa164793704af01106aa3b2d8 *inst/extdata/beast2_example_output.xml
5ac7281e62e96d3c330bb6072aa6096d *inst/extdata/beast2_example_output.xml.state
9344047dcd5ba98ddbb9b12504eef235 *inst/extdata/unplottable_anthus_aco.trees
65fa86664913e84c5458442c77399167 *man/calc_act.Rd
22f7488c5ff974a00d7e840c1e136469 *man/calc_act_cpp.Rd
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3f7ec1100af2948bb3e9ec6f6e7ddd7b *man/calc_esses.Rd
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632ac9ff4f736492d17b4109dfe830fa *man/calc_std_error_of_mean_cpp.Rd
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1754825a22049bb8d67d79458775cf45 *man/calc_summary_stats_trace.Rd
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49c0ed238a3e2143ce0272c975214331 *man/default_params_doc.Rd
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7b081af168b34e37617205ab24d0f447 *man/get_tracerer_path.Rd
ed14c54a7244628c5e3a262202d33fc8 *man/get_tracerer_paths.Rd
541990cb9d3c85d99300c9748205a60f *man/is_posterior.Rd
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cb623e9394c436949f0d4d5ffe3a9e48 *man/parse_beast_log.Rd
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162c95f9c3647159f91e3fffc517bb6f *man/parse_beast_posterior.Rd
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a1f31653a9cd0c37bce986c1801fcd1d *man/parse_beast_trees.Rd
ccde45b4b8a17a2120eb03a557521bcd *man/remove_burn_in.Rd
1d352449429a0ab818d4000f3bd09eaf *man/remove_burn_ins.Rd
97fe6f6c1e4092201769cb29c6557567 *man/save_beast_estimates.Rd
904dc96f5cd112457f69ff7347deb56c *man/save_beast_trees.Rd
df38ec9148005a1acb5b6bbae6e30c62 *man/tracerer.Rd
941c560e55c2835d6d79700f6328af62 *src/RcppExports.cpp
0f4e9e12f4996648bd0af0156d4d1a83 *src/calc_act_cpp.cpp
35d34fbde8e5a56972c72df707484233 *src/calc_act_cpp.h
ad741e0ae5c31e93b0994f2abe45116d *src/calc_std_error_of_mean_cpp.cpp
5bf25b7bf60f13aa1772467ce8ade52f *src/calc_std_error_of_mean_cpp.h
04b095cf166c3923651d5e09ffca1a7b *vignettes/demo.Rmd
9842094673860d7ac11441b9e6f01697 *vignettes/demo_estimate_effective_sample_size.Rmd
8f440d5ac99cd59bf0358d79149231a5 *vignettes/densitree_example_output.png
2852b291a76649e78063f44f22efb500 *vignettes/profile_calc_act.Rmd
6e4922cbde8118a40b0e7e2d6f9a500f *vignettes/profile_calc_esses.Rmd
edd02856b66dd5c719417d04d58557cf *vignettes/read_beast2_trees.Rmd
413ee70600b6e3bd87cc7c0b2bddc005 *vignettes/tracer_distr_posterior.png
bdcdd370c9ea76c571ad8138e1937687 *vignettes/tracer_example_output.png
8d16e3a317b24da4b09c4c7cb40482fa *vignettes/tracer_trace_posterior.png
