b354c6c06f7a0b447b6d0f780ab0b012 *DESCRIPTION
6d09bc56bb99e294c2ec6382e914b2fd *NAMESPACE
231d84899a494f11ec757d7d1e969b5e *NEWS
aeda5901d16339bb5d61ee434422e86d *R/analysis.R
47d5566ca1686c3dabde59008b84f989 *R/bayes.R
592d7b6911d9d06e18b388eed8cbcea3 *R/graphics.R
d4080194f646974cb4f3c0089378f6de *R/misc.R
4020afb3d3685ecdc0ffa459ff213c2d *R/model.R
97c0fa67caa5c8ee0376e599248546b6 *R/next.R
4c2d13a41cc82e15cdc73cd9d0c25e2a *R/workflows.R
dc22c9077dd9a1916c9062e69180a45e *build/vignette.rds
33cb86ef72ebdd33f91839241f0bd890 *data/CP.example.RData
f865934a3a177ac65318e881f0c0c3d3 *data/example.seqz.rda
a13b971aa94a30d151176acb0bccf441 *data/example.seqz.txt.gz
914fe0d8e5903edd47f5dab5d18c2c57 *exec/sequenza-utils.py
d3e4e9be3b08fd3e40977f4f8e1aff9e *inst/CITATION
e8a13df2363bce7b30d929083c7b40d7 *inst/doc/sequenza.R
bb6d23f2d0984177ffdc53a31782a093 *inst/doc/sequenza.Rnw
1da123b3bb96413596faca66349aa5cb *inst/doc/sequenza.pdf
a665959a09431961a03bfca5d9e6887c *man/CP.data.Rd
191710987d5ced5a9d432031d4f856f9 *man/VarScan2seqz.Rd
75446b25323a9826ec51350fee71236c *man/baf.bayes.Rd
618a75158dae6ca2efbb7742e8068499 *man/baf.model.fit.Rd
bd71f7319858ffdfa6f64301dd95d0f0 *man/chromosome.view.Rd
53a4b9d1dd83b03f491e4ea3b5957a02 *man/cp.plot.Rd
04bf66120c55e03e09f9137aab4a23b5 *man/example.seqz.Rd
82bc653f9b6365b7c08f1eca72304a54 *man/find.breaks.Rd
8fc4596f6536ff6088058d3410c32a22 *man/gc.norm.Rd
ee25d11621b986278c47dfb63981da8a *man/get.ci.Rd
23f573c9de0447b9a1f29e5ab66beac5 *man/model.points.Rd
8bcfe946817eac37fa288a349a31f7af *man/mutation.table.Rd
aa09063a3b8047b939726c2860b142c2 *man/plotWindows.Rd
a77fce586f3bc8b65046ceb3d7296551 *man/read.seqz.Rd
c5e45e6bc6f7b4eaadc160f0d28a72ab *man/theoretical.baf.Rd
f2abe359b28581ac7f261a6185a69efb *man/types.matrix.Rd
8a6379846fcba08794e7ecf7dcf50eb6 *man/windowValues.Rd
2f9ad02f2ec9c382394dff14ce62af62 *man/workflows.Rd
bb6d23f2d0984177ffdc53a31782a093 *vignettes/sequenza.Rnw
fbb2da96e9546ed5994885d9b2b51994 *vignettes/sequenza.bib
