useDynLib(krm)

export(krm.score.test, krm.most)
export(getSeqKernel)
export(sim.liu.2008, sim.liu.2007, chi.norm)

export(readFastaFile, writeFastaFile, 
    aa2arabic, string2arabic, stringList2arabicFile, readArabicFile, arabic2arabicFile, arabic2fastaFile, fastaFile2arabicFile,
    selexFile2arabicFile, readSelexAsMatrix, readSelexFile, 
    readBlockFile
)
export(alignment2count, alignment2trancount, calcPairwiseIdentity, removeGap)
export(rmdirichlet, rdirichlet, ddirichlet, dmdirichlet, modifyDirichlet, logIntegrateDirichlet, logIntegrateMixDirichlet, readPriorFromFile, hmmMargLlik)
