9478d64a37081598604472b07397b203 *DESCRIPTION
90aedca12ed87b241fb294d3d18b15dd *NAMESPACE
14d802f02fe744f645fef34c73ae0eab *NEWS.md
49e5c3bac134ae2126c43af5a250697d *R/annotation.utility.R
929969f1d08f6f8a1666bb1d201c8cb7 *R/gpav.R
47b5ce83fb1eb1a1987a2e2f53fd92d7 *R/graph.utility.R
d27fa2344e00e8b72c5cb750e7d2ee9f *R/htd.dag.R
3526568342db0b34c5ac53603e93462d *R/norm.fun.R
419d1992b062763940c78076c1c029e5 *R/obozinski.methods.R
381acaf7708abd7c3607caa80e63b962 *R/perf.meas.R
a040ecfb9fcb9ae66b98e1b3961d7a36 *R/pkg.attach.R
e737957db40e9d28794cb391c1b0f924 *R/pkg.import.R
98ab5d6a24b13c6523413edac7c161c1 *R/tpr.dag.R
c77667766fe897e82eafeca32a18edd0 *build/partial.rdb
43328fa551e8065e4d3c5da2b6e55ec0 *data/graph.rda
29f9d7a6477e2472d64779231a2c867e *data/labels.rda
b38c67e9118b338a34a4f67284fed863 *data/scores.rda
8a1a6c2671b3af583bf39bc32c10698d *data/test.index.rda
a6784be6fba1850db1a693ecd6b44e17 *data/wadj.rda
231deecd6cdc3aaf9c031bcf8e8ee443 *inst/CITATION
d0108ed271c18e499ecd92ecd23374c4 *inst/HEMDAG_2.7.4.pdf
e46f9aeba1211d23ae08379e028a8456 *inst/extdata/edges.txt.gz
f44bbfa43dd7fe005386a17edca4011c *inst/extdata/gene2pheno.txt.gz
5d5105e3f14e98178c3586e12283d442 *inst/extdata/graph.edges.txt.gz
ae5c730c9a4b79556d70f65e0ba25223 *inst/extdata/scores.list.txt.gz
051a2dbc7af149382cb34ad8ae556543 *inst/extdata/scores.tupla.txt.gz
93db7c60b410f81688e146ea93466620 *man/HEMDAG-package.Rd
25b7cfb3349549ef518223b17ab72441 *man/adj.upper.tri.Rd
56ae76e6521047ad443f937a672fc042 *man/auprc.Rd
b15a344355462cc537fb4b08be6ef554 *man/auroc.Rd
afea1bbdd4758dff24480aa30d162299 *man/build.ancestors.Rd
62eb9665081c09d6e9476e13ab83e956 *man/build.children.Rd
208a5963b4f91ed23f7cb154cab74af4 *man/build.consistent.graph.Rd
d022fb8bd7dfe1ea6970de04f4263d5f *man/build.descendants.Rd
d0a40df16f2f1dab95148fcad354aa7f *man/build.edges.from.hpo.obo.Rd
b74e50ca0513c9845270733b9725b8ba *man/build.parents.Rd
e09fc2a5dc47580af82affde46f526b5 *man/build.scores.matrix.Rd
50de40017861a3586ee05a243772b27d *man/build.subgraph.Rd
a4f47dcf1cf13569f38a19647cc8571c *man/build.submatrix.Rd
6276c08ee3663e2e138842a8d285ce1c *man/check.annotation.matrix.integrity.Rd
dc9154e08a5a1786698665e74f1edf7f *man/check.dag.integrity.Rd
2db8534b4a885bfcc249fb565c7ba1b9 *man/compute.flipped.graph.Rd
ab40aed6bd8b8f07da0268c9ba04c5e8 *man/constraints.matrix.Rd
52ab5fdc2ce47982b3cc4a47d0ebfce1 *man/create.stratified.fold.df.Rd
e136c51cf2492ef7360cf24b2a3e9c11 *man/distances.from.leaves.Rd
a5c64b29b3b9f10065c3fe7cd9778e47 *man/example.datasets.Rd
860432b4bf05a884748ba84a5e8b67e6 *man/find.best.f.Rd
c390e165f547e61af4c19a747e7878b6 *man/find.leaves.Rd
c30bc4f12efa4d56bd415bc71e222e48 *man/fmax.Rd
2579fa791350f37705c108dbe6da3e48 *man/full.annotation.matrix.Rd
c8ff30d6bf9c8ca6ef0fa913d4479c8f *man/gpav.Rd
1c82a28b38339748eb723e72853938f7 *man/gpav.holdout.Rd
d344b427b209ba890029a597f8bd3c7b *man/gpav.over.examples.Rd
ffc157eca876a9247e3a68df3b2dbd49 *man/gpav.parallel.Rd
d882b63cb62190754ef58f85121b5098 *man/gpav.vanilla.Rd
1cc3019d214b28dd17f16d25c2170eae *man/graph.levels.Rd
5fae7e8063c8ab82b0d4a0c8365dc11f *man/hierarchical.checkers.Rd
b4db81d76b8764d7348b853ed764fe01 *man/htd.Rd
544242166b796ac2662179bfd681866b *man/htd.holdout.Rd
8372be647c470717d4caf50afc7cf152 *man/htd.vanilla.Rd
e9af539cf4af535493e79030cc219276 *man/lexicographical.topological.sort.Rd
a17ecee4c2c426e22be4b2c0c8049fa2 *man/multilabel.F.measure.Rd
b288d33083fccc31ef658228234473c4 *man/normalize.max.Rd
781dbf6abe09b084f40f106bc811239a *man/obozinski.heuristic.methods.Rd
7e2307a0d1dec2c0382b0573276e6de7 *man/obozinski.holdout.Rd
98043fb4b0b6f31dab4cbaee3763b8c1 *man/obozinski.methods.Rd
6475de2e46cc621f3db6dd11eae687fd *man/pxr.Rd
9e49bb988868eb5305cec28d120d63f1 *man/read.graph.Rd
b1cc20bbe24c2fc62c3c8ddc9e6f99b8 *man/read.undirected.graph.Rd
e33fee20c3b4cc426252a8a0ee7b0196 *man/root.node.Rd
5b5b0828ac05e66c5a5785d086ecac72 *man/scores.normalization.Rd
a44b68d5f0a1de4789edafbca0c3edce *man/specific.annotation.list.Rd
8f4e593363a08c49770b22c7105b9d17 *man/specific.annotation.matrix.Rd
a6d7271f9eabcf7d93100a6ed7f345c5 *man/stratified.cross.validation.Rd
165428989115e4a6f05bb7f9d7f17eff *man/tpr.dag.Rd
e8ddbb38c389b68a1aca021e525efd9b *man/tpr.dag.cv.Rd
9ca829b5b52f7f7dbe5ac8431be969e9 *man/tpr.dag.holdout.Rd
ba9b4b6691bb50bb58fa22c8fe4427dd *man/transitive.closure.annotations.Rd
9296b9710965620cf534c04393ebf143 *man/tupla.matrix.Rd
9976d21b05f9f05c76ae101f06604120 *man/unstratified.cv.data.Rd
c41c626caf31f262b1220e6af1eb079e *man/weighted.adjacency.matrix.Rd
401c06e6cedb45a8741ab478412a3d0d *man/write.graph.Rd
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars
de51e9153abbfc51501fbfc1fc4c5665 *src/gpav.cpp
a02ba382db6b024cb986998db299dd7a *src/registerDynamicSymbol.c
3c1971d21673f98101acc107b41e77e5 *tests/testthat.R
18d363059db7f71e52bbcadbd589beeb *tests/testthat/make.test.data.R
501190e0f827f29975af8fb721b94198 *tests/testthat/test.annotation.utility.R
515410ea81cbd8af9d73d38f47dea20a *tests/testthat/test.gpav.R
5cd755ae9b5d65ebf0309f410a28c79b *tests/testthat/test.graph.utility.R
b45d5beefd28431ff992f1e724e79d03 *tests/testthat/test.htd.dag.R
298a40cf464acfdfde298248d3b6c366 *tests/testthat/test.obozinski.methods.R
8f1cce2538c2dd4bfc5f435280648cc4 *tests/testthat/test.perf.meas.R
1bd19ec1b3b6c826e28fec7415891017 *tests/testthat/test.tpr.dag.R
