57da49b9f5c909774e291c1a34edd4e7 *DESCRIPTION
75de0fe6613c0cb7267d4115dec0159f *LICENSE
6796b522f7cc5128282fecb209d11d28 *NAMESPACE
c3d71215cc54ea4c2694bc13c4f31fef *R/RcppExports.R
1d386d432cc2cb4ef5d34c62c7d8e566 *R/data.R
c7ce6df45ce70b1798e85d58600ede09 *R/helpers.R
11f534289bfd5e70704d3f676ed9b8ef *R/utils.R
f00272e81a808bb9c1603b6ab8cc16b0 *README.md
eeb7a2bfda8d8cd73579e8c5099242c1 *build/vignette.rds
4ffaa2ee75baea64b9069037046f05f6 *data/Evers_CRISPRn_RT112.rda
606faf9f32351f73e2ab63545d51f9d7 *data/Sanson_CRISPRn_A375.rda
8b84e8386514cad52008a5d9bd554ba5 *data/datalist
b2c1023eedc0177cb25b5625d66a27a8 *inst/doc/cb2-tutorial.R
5d8df832639bfed8adad248247feea0d *inst/doc/cb2-tutorial.Rmd
9a5e17a241bda46632e9cabd8e9e4ea3 *inst/doc/cb2-tutorial.html
6b4f89a0007ac0ae7f1aebda08d0821c *inst/extdata/Shifrut_et_al_2018_Cell.csv
7caa3925001fcd5b96b0005003547eaf *inst/extdata/toydata/Base1.fastq
6cf0a8ac82eae578e9d51c162cafe613 *inst/extdata/toydata/Base2.fastq
1f18ec364a0e9cd12293a8cc61046188 *inst/extdata/toydata/High1.fastq
f38f7584d527b80fba902f050cf28588 *inst/extdata/toydata/High2.fastq
5bd8c3a850f938fc81165ecbaca4abb5 *inst/extdata/toydata/Low1.fastq
fc3b83b4506f3d7b1bb9f052902e94ec *inst/extdata/toydata/Low2.fastq
26e2347380412f059eab3394a1b308e2 *inst/extdata/toydata/sg2gene.csv
ac57ee2d93bc9d8ff564c5dbbc3cef47 *inst/extdata/toydata/small_sample.fasta
4c0ef094001d93f4ad1e27efd69f048e *inst/extdata/toydata/small_sample_dup.fasta
943b4e41b32e3a38ee6505224700205a *man/Evers_CRISPRn_RT112.Rd
b2e59e0b02cc880149a9bfab856e04ff *man/Sanson_CRISPRn_A375.Rd
7c70e3848507b2e9facadcb244701739 *man/calc_mappability.Rd
4effad862ee930776564210caa832b64 *man/fit_ab.Rd
6043f53bf593e84fa5f8b79a4a0e9618 *man/get_CPM.Rd
11db3f97ec0f7dfdf68bd069aceaf6db *man/join_count_and_design.Rd
953a9f90751ed1df7e337d5735af0632 *man/measure_gene_stats.Rd
5c8b955e2346784ee859107acd79d018 *man/measure_sgrna_stats.Rd
0c4071e4abb8f23ca51d02b19f60a567 *man/plot_PCA.Rd
174fb81a4990dfdda14e44eb8ea7162a *man/plot_corr_heatmap.Rd
db510ff54ab2f3296243a91a11891438 *man/plot_count_distribution.Rd
2c68546e05c76867ffcaa8788d052c79 *man/plot_dotplot.Rd
f2f40befeee9ffca4b5113cf249d03b0 *man/quant.Rd
adfe7c33bb635ee1d187e76fd2f1ef4b *man/run_estimation.Rd
6418c516ab48ae14dc5981fff8548ed4 *man/run_sgrna_quant.Rd
a0a656e2f7b39f41ad9daef87f79a52c *src/AdaptiveHash.h
7a0537e4a80f87b8e65c9718a49320ec *src/CB2.cpp
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars
932d9c1eedd4f4b0e54aea23acf798c7 *src/Makevars.win
839cfc899d1b16c8987b9a99428153b8 *src/RcppExports.cpp
3c76a7a8babb4b4526c2bf87bc41ff88 *tests/testthat.R
6253d8b819f8d0160278042775bb56a3 *tests/testthat/test.toydata.R
5d8df832639bfed8adad248247feea0d *vignettes/cb2-tutorial.Rmd
