ad217610e6dce6a1af6113e4eb6f990f *DESCRIPTION
cb852629ce258fee29bda9d393e96bf4 *NAMESPACE
abacf846784bf6f7eb2b2f7932003b97 *R/BreedingSchemeLanguage.R
6d3f97b464447412a287ae8a8b5aaee6 *R/calcAmatrix.R
9bb34ac5cc5150febc8eec8e8fe9db5b *R/calculationFunc.R
e50c039c3d630ad16965484bb1626c26 *R/cross.R
e350dcca2dcea83f130f30682233a001 *R/crossingFunc.R
a10d27d0cf5bf37bd3c0eece649b2318 *R/defineCosts.R
5107f398d0304b2ea970e573b61552c3 *R/defineSpecies.R
8dd5802856336bdaafcc42e4c1fdb5fd *R/defineVariances.R
948403fd39c9546514ea392c44977f12 *R/doubledHaploid.R
6e845f726f90ccce8fd8353fa03ae8b8 *R/genotype.R
4c60ff1c67a7867f723471f8c7a1ab57 *R/getCoalescentSim.R
f73d69c73da27a04d3fbd2b51739b148 *R/importData.R
7a076060ad4a687d5048b7e2d13ccee9 *R/initializePopulation.R
aedfe3162b0a713ad323aecba838f46e *R/makeMap.R
2ee9948ab5d2f61d0f7b560f09b82e11 *R/outputResults.R
31ccdd91a46c1c5611bd8114721f5868 *R/phenotype.R
35a05ce6d63ce312559c8682621c2c1c *R/plotData.R
a02a79ad26b13c3f62519944ff393c4f *R/predictValue.R
aef65db49d984e870861c9a4336b3cfb *R/select.R
23a23a28e15287a885387fa797c122cf *R/selfFertilize.R
57d967312d823dc0c80240a8b2ba2318 *README.md
0f5aa2b0f2194f5e0cb815c187f41815 *build/vignette.rds
a159eb35b0d4b198a8361d11b35c85de *inst/CITATION
f33a1337713675291aacc5a87e062795 *inst/COPYRIGHTS/GENOME
2f665a5780775a434dd928407535eb6a *inst/COPYRIGHTS/twister
76f9536877caa8d8230b66268055b0c4 *inst/Manual.pdf
913f003ce831eac918634967ac27245a *inst/doc/intro_to_BSL.R
5070294ee21131dbc366b82f368aed32 *inst/doc/intro_to_BSL.Rmd
06c14e40a710f03967b881169ce04012 *inst/doc/intro_to_BSL.html
b159be060804c9a1e9443abb231821b0 *inst/doc/load_existing_data.R
71dfff97cf06916dcb284e887d5d48e3 *inst/doc/load_existing_data.Rmd
a97a0f2d4dbb1d2ba4c7d55e97fc6c2f *inst/doc/load_existing_data.html
74bbdd0dd4cc171b0865f3b472da32c7 *inst/extdata/exampleHapMapFile.hmp
40fd018f4eac95c2ddae02e34e948ba2 *man/BreedingSchemeLanguage.Rd
8be7e0f0a0fa58bd486868b3bebd5437 *man/DH.Rd
1624c421424f671faf51e8c571cae2f5 *man/addProgenyData.Rd
887f221a91004720b85da61fef8a27f5 *man/calcAmatrix.Rd
ba7e722be6ef693a736e3f269669289c *man/calcGenotypicValue.Rd
21fef866ec6e600609162c14a4c2ffff *man/calcPhenotypicValue.Rd
86e93b00f8768ef25ff9862ff9dd58c1 *man/cross.Rd
58a93dad3315fea9397d9e944aaddaf6 *man/defineCosts.Rd
dc5300a012b27bf63c38db5847766e6a *man/defineSpecies.Rd
12776ce88557d54e62b069a6a331f0b6 *man/defineVariances.Rd
3a596c065a02aa6fd79383e85fec17f8 *man/doubledHaploid.Rd
392757a794324b904db147d35fccf8af *man/genotype.Rd
7ad38919b8703c3c0de61297ae1f2898 *man/getCoalescentSim.Rd
f545a7b5d86795e8c39b86ad4d0dbb3a *man/initializePopulation.Rd
996fcee29074754d682d62803a25796c *man/makeDHs.Rd
7177b6292a6dfb7f2a5267f70b3e41f5 *man/makeGamete.Rd
e2ac790dcbe55ca7d5b0be598c503ce0 *man/makeMap.Rd
54d66601fff48d65232c46f6b8e20455 *man/makeProgenies.Rd
89588ad4f4c72f395684a69723b31cb9 *man/makeProgeny.Rd
ae1c53e22bcb05bf3b8ffc5861fecc9c *man/makeSelfs.Rd
ddd34fff0c111538c8b83d389fef4d70 *man/outputResults.Rd
0c1106165d5735943b3384072e1b3e52 *man/pedigreeMate.Rd
1a8c109f65b19bf0293db4d64186778a *man/phasedHapMap2mat.Rd
08a03f65de511fd0d104e3b853ae1b7a *man/phenotype.Rd
e753e951f650e49d6db76d7a92a035fd *man/plotData.Rd
9734dc409661bbe5f18dcc11bd9f8a8d *man/predGameteMeanVar.Rd
c1c02669beec0da6c323d8f87af2effa *man/predictValue.Rd
87e9226bf76a4246dcf08152bc727a8d *man/randomMate.Rd
0d11f41a44193c3d4c5448057a02b137 *man/randomMateAll.Rd
4f7c71a1ffb10a635f470a8739360642 *man/randomMateNoFam.Rd
3c081784c43b9e09fe214274075848c1 *man/select.Rd
d30f6331a4e5603ff39e4414138aa223 *man/selfFertilize.Rd
c1cf6b1a7137b2690ee115b3b4f7ba03 *man/simHapMap.Rd
b2187b9e8df45f8f59ddde55ba460370 *src/Error.cpp
ad0baadd735c59feb7ca4fcc76537427 *src/Error.h
8206a09a8ca68c4ead8eea70b818b659 *src/Main.cpp
8f566d214eb787da6f132eb794ed3762 *src/MathConstant.h
b01cf9775166eb4a48b0a5b6115190ed *src/Random.cpp
56f1df304a315b0f20df07ca84df2ea2 *src/Random.h
a29bd0acf2e9e779d45dc939c06d0d34 *src/genome.cpp
a6f5346d16ce65d9740bd8b9e1009a2e *src/genome.h
dc9aac351e41f8fa47eb1c71254b2200 *src/init.c
50dc14fc3b8c68ce100bf456dacf6bb0 *src/stochastic.cpp
81719184a4ce6903bcaae670f18eb900 *src/stochastic.h
5070294ee21131dbc366b82f368aed32 *vignettes/intro_to_BSL.Rmd
71dfff97cf06916dcb284e887d5d48e3 *vignettes/load_existing_data.Rmd
