Allowing divergence from initial conditions for 0 iterations.

maxGrouping: 22
entering MCMC loop
	Estimate Codon Specific Parameters? TRUE 
	Estimate Hyper Parameters? TRUE 
	Estimate Synthesis rates? TRUE 
	Starting MCMC with 100 iterations
	Adapting will stop after 100 steps
Status at iteration (sample): 100 (10)
	 current logLikelihood: -827733 
Current stdDevSynthesisRate estimate for selection category 0: 0.598378
Current stdDevSynthesisRate estimate for selection category 1: 1.10799
	 current stdDevSynthesisRate proposal width: 0.1
	 current noiseOffset estimates: -0.114238
	 current noiseOffset proposal widths: 0.1
	 current observedSynthesisNoise estimates: 1.01369
	 current Mixture element probability for element 0: 0.490531
	 current Mixture element probability for element 1: 0.509469
Acceptance rate for Codon Specific Parameter
	AA	Acc.Rat
	A:	0.35
	C:	0.44
	D:	0.36
	E:	0.32
	F:	0.45
	G:	0.33
	H:	0.24
	I:	0.5
	K:	0.19
	L:	0.4
	N:	0.39
	P:	0.26
	Q:	0.34
	R:	0.34
	S:	0.32
	T:	0.31
	V:	0.38
	Y:	0.35
	Z:	0.29

acceptance rate for synthesis rate:
	 acceptance rate to low: 0
	 acceptance rate to high: 1996
Writing File
Done writing
leaving MCMC loop
