2dc0a6a6ad6dcb25ad3b5751f49cb59f *DESCRIPTION
bc6dc567e323431fe65668a75863c4e8 *LICENSE
85dff291b283b1d33f7e86dc70502607 *NAMESPACE
0fbd652e74762993e18c0310b8e30136 *NEWS.md
d056b3948855ead39284593a79d1d237 *R/AlphaSimR.R
9c1678ac351a89d72723411c09559b9f *R/Class-HybridPop.R
2257d39329cb5712e9f306d50a030a5f *R/Class-LociMap.R
ef8b4418d57d6bcc3caef9ab8396ead8 *R/Class-Pop.R
b69e417398890b3b5eabcbbefec717e1 *R/Class-RRsol.R
b3ffc236f4f746f538ffdf4a7f86d4ae *R/Class-SimParam.R
465ad46a8171a8a31fe534e608f10484 *R/GS.R
d3ff3ec175611403bb75ce06e05b79d5 *R/RcppExports.R
334f2d4faff460edebab929f405f449c *R/crossing.R
9a13a0474a23f6afd1145be37d2fd7bc *R/founderPop.R
b2b99ad9d43ea1827038a77b00ca8391 *R/hybrids.R
6b0a3d712a700ea9e888642e5edf390e *R/importData.R
1594db98b4bf2a1421147eef8614be6a *R/mergePops.R
f7c7bb2ed07062716f7de7a53317f156 *R/misc.R
c9295118fbf98a8d09f984413f6d4b0f *R/phenotypes.R
235ce848536f5ac356c932a4e6f35816 *R/polyploids.R
0d1e6358667ae909c7390c6d4e4fe5a3 *R/popSummary.R
146a6c6e8eefdf926f3abdbb1e2a0774 *R/pullGeno.R
1e5dc527106b374f5aae90c11f9360dd *R/selection.R
f7e5c20afea04d8e2f592aae23278bc3 *R/writePlink.R
5d5e0b27d73b64ee778d522aed713df0 *R/writeRecords.R
869c72c57eaafe92b0562f64c43db6f5 *README.md
ece827162eb0de36545311ee06228842 *build/partial.rdb
d2436e5409c1b3019a3f1b8750f9e669 *build/vignette.rds
df79c284e3995144ae60affa4ff8f379 *inst/CITATION
655c8b08499454af3025ec8b4bd0d3ef *inst/REFERENCES.bib
b59adee74c8bbc36203a9b4f12608602 *inst/doc/intro.R
43cdfd026732b2bfaa6e2623e278bae2 *inst/doc/intro.Rmd
102679425b1e1ce6054e99b440204842 *inst/doc/intro.html
27e0a56cdd450d19265f8dfa42e1e090 *inst/doc/traits.Rmd
f146afc51919bbcd4f6c8727b86bab89 *inst/doc/traits.pdf
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52b3f755d0ab8bc7e8eacad4632408d9 *man/HybridPop-class.Rd
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944e34dbc69f057929c3677cd756973e *man/NamedMapPop-class.Rd
ca509050c1f9a0142169963cf95f427e *man/Pop-class.Rd
1739a64856daf612fdad810507673738 *man/RRBLUP.Rd
ede4b75c8daef3f150193fdd28c14498 *man/RRBLUP2.Rd
66e4f17eaa6a9edf00adc9294309cd78 *man/RRBLUPMemUse.Rd
9d532c9e4b1eabd4d0883f8feb6662e7 *man/RRBLUP_D.Rd
ec8752a24481075e73ad75d04441ea2e *man/RRBLUP_D2.Rd
8e84436b8aba58471e64006cb93a27a0 *man/RRBLUP_GCA.Rd
9898f1508213ea1ac6c41748c9e776dd *man/RRBLUP_GCA2.Rd
1924999ca05748f45ba5ee97f84e187d *man/RRBLUP_SCA.Rd
569d80eed6b924ea1ec23481b1785a4a *man/RRBLUP_SCA2.Rd
1d59a38a5a921455c14050a4afda5fcb *man/RRsol-class.Rd
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72f78fbad7a67c5f30fb6295d1d351c9 *man/SimParam.Rd
1f21fd7145be4da53f79b54f048fc332 *man/TraitA-class.Rd
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284a995ac0cf166be10bb037241d1a50 *man/TraitADG-class.Rd
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08fb2f155339df42abc4c9cefe665356 *man/attrition.Rd
0a25bf0f3803e38a6ef56d4deab315dd *man/bv.Rd
39801b16605adab0421acfc419f2656a *man/cChr.Rd
585623bda575ff90082bdcb49d1494b0 *man/calcGCA.Rd
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5aba60f9e9c7039a708dcbea9d13af8e *man/editGenomeTopQtl.Rd
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cb153ab178b58bc71973787300de641f *man/genicVarA.Rd
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0a4a1baba2cd2393cf6ca9ba4b740260 *man/genicVarD.Rd
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3d9bc7ddbb2432f137170cc749583984 *man/getGenMap.Rd
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730893ddac2fd0f72a9856afcedd75f9 *man/getNumThreads.Rd
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1c3e2eea3dc913d79bc03ef9d7ace65c *man/getQtlMap.Rd
0f314150f47954e65de863a8b5b9d9bb *man/getSnpMap.Rd
9d67d3dea8a516cf3df611f463e38290 *man/gv.Rd
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5eba4ba604a6a2116929fb7351ed4c53 *man/importGenMap.Rd
43ffd6b92d5d0a607c2767ebb30fa886 *man/importHaplo.Rd
160af02e3b1aaad946bbc9e7e2be83be *man/importInbredGeno.Rd
f2b90bbbc38860733f7dd01b3b27a531 *man/isFemale.Rd
394bdc75f3506de8a0ba3137989f49e1 *man/isPop.Rd
7e2f81064532350abaf6ff6eedd8959d *man/makeCross.Rd
9d886c8641b3b7d0cf1659f55e6486bd *man/makeCross2.Rd
5f50e7bc73fb5f4d69aeea1cb07d8fe3 *man/makeDH.Rd
1197d8790fe2c2ce80a2ba90b3f368c5 *man/meanG.Rd
6a7988b3d377a691fa42fb932056156d *man/meanP.Rd
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87c41767b308de52b67264a41f1f29b8 *man/mergePops.Rd
573df50ea78db6a234b19454d0d9cd1d *man/mutate.Rd
8748a0734fa05837da542f4068995721 *man/nInd.Rd
3f534cb7c2edc5eaf5c087e98e50bfdb *man/newEmptyPop.Rd
e51e3387846d080844d3742e4b1dc1e9 *man/newMapPop.Rd
39661f341e9d0b0375f2367f79839249 *man/newMegaPop.Rd
178a3d8cd772ca7e81c8a04d537767fd *man/newPop.Rd
a7de10c6c64aabb60b232d7ec65188b0 *man/pedigreeCross.Rd
3a22bd04002fa459703faafc9e54c4c5 *man/pheno.Rd
456e31e7d92ef0cd2418028e322f301a *man/popVar.Rd
541389a9c859da0f865bf1cdc353fca4 *man/pullIbdHaplo.Rd
3ae7565f1e783f29eafd17c36ce823bc *man/pullMarkerGeno.Rd
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286837ae81c21e4b20b2c35f06038cde *man/pullQtlGeno.Rd
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8cf7f632081388c8aaaed62df449899c *man/pullSegSiteHaplo.Rd
57e8a8a71f3ac5dbddd302ecd4f81425 *man/pullSnpGeno.Rd
240542d4721492c1ca08ec84ac11a1d4 *man/pullSnpHaplo.Rd
31837e5c385adc353a8cca839fa29829 *man/quickHaplo.Rd
124820e21796207bb8fd9134bb034b70 *man/randCross.Rd
50ff5cf7d3616ac73c31f3ba176569c9 *man/randCross2.Rd
982fd72e788eebcacca73b66699e8369 *man/reduceGenome.Rd
1d911ea9c563305af40a8a0c52c77171 *man/resetPop.Rd
43b22bc789c579107021ec7d69ccfab9 *man/runMacs.Rd
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4b7d578f9130bf4f833e2c0f4d4c2d7c *man/sampleHaplo.Rd
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1e6a20c079f6f3a69afaa25c7be3c49a *man/selInt.Rd
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74c6c93063f33c21eaeb8865809374e9 *man/selectFam.Rd
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48b9edd6e3123b5514d9c86edffa56c7 *man/selectOP.Rd
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e1d8abe8e4f12fa506fe39eae1831ca4 *man/self.Rd
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f476275e390012e35c0e39bf5b712509 *man/setMarkerHaplo.Rd
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8f6e071b8eb527643fa6696c7fdfcbec *man/setPheno.Rd
69d257be0ba85d75e8d0af35ce247ef9 *man/setPhenoGCA.Rd
781e19a111e9f8bb9714816caea4f96a *man/setPhenoProgTest.Rd
8aa528591ee30195624b74ecd3544083 *man/smithHazel.Rd
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82e9eac92b294c09c31d710ff995ba06 *man/solveMVM.Rd
dc2ed17feabd1249a26c4293e4e0d65d *man/solveRRBLUP.Rd
567cd1a161aa94379e58451bdfc3742c *man/solveRRBLUPMK.Rd
82883ade0d74aaa230f46e4f8423109e *man/solveRRBLUPMV.Rd
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57ff62a05b5a11a33018c5d16b51d00f *man/writeRecords.Rd
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610876505ca439dd6ac7a6d714d79f8d *src/constants.h
72e1755d9fa0b18527066cd5ee8701de *src/datastructures.cpp
6dc110010aa9a9edbce024d9cba98a48 *src/getGeno.cpp
67d6bf84c189d66c12b89f1e7ca2611e *src/getGeno.h
004ad186eb2b3e64807c952361c6579f *src/getGv.cpp
c91455fc8cc42234129fc0258c4849eb *src/getHybridGv.cpp
8450ae3689f6212bf3c549db50714848 *src/ibd.cpp
86eb4cadc0bf257aa3eeb85d01bc8cdf *src/meiosis.cpp
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8d66d82082726c3b41a4c63bbc35d462 *src/misc.h
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8c04cd5d91ae77f6305a1dfc6611bc20 *src/simulator.cpp
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5012f419d470d6b08ebedda893cf41f4 *tests/testthat/test-statistics.R
a31d159c8617cff07cf06abfd4643d93 *vignettes/AlphaSimR.bib
43cdfd026732b2bfaa6e2623e278bae2 *vignettes/intro.Rmd
27e0a56cdd450d19265f8dfa42e1e090 *vignettes/traits.Rmd
