60149dc58f469d8bef6ca32ac1a4455f *DESCRIPTION
2603458c2b83f8e0b35eb5e2edcc8be6 *NAMESPACE
e962777367051cd9f95eba4f19feed06 *R/aio.R
ff980d1ceb1c1606daa599e8ddcb93df *R/bmh.R
dcd0ef1f20d0254e1ce9fad0b8287ca1 *R/co.R
00bf7c27af419916d03b2c5bea34bffd *R/cs.R
894f999aaa4841d0560ec526c7158437 *R/fastDist.R
a7942f63193e3a03caba7220f6c00aff *R/hh.R
85f48e6e07caf3f6524ef8120874cabe *R/hsphase.R
a351e1822bc33cf5130177983b3c3e41 *R/hss.R
b2456c0ebf8f3114ede17c0f2de7f501 *R/imageplot.R
3dc9e07c320cf3d985efeae93e9c31c5 *R/impute.R
49f1e45906f9f212f51823b6001fa769 *R/maf.R
e2d05e5008ad53287a13439146b0f898 *R/namingInferedPedigree.R
458fbcbb16b8c2045994946b35522f73 *R/ohd.R
186a5af1d9e870b9ae6ea969d1937dfb *R/ohg.R
06fc3e6de1b3cb05773de995b4cd6a45 *R/ohplot.R
ddea252dbe136622ecc4db4bf47e86bd *R/para.R
84909efcf123d3c2a2b2b5960e29b23b *R/pogc.R
288eb0f5745392408021300cafd3d956 *R/prCalus.R
202057840835cbfc48229625e9392417 *R/prManual.R
d8cc51b192ed3ddfb8e765f35dc185cf *R/prSimple.R
8d68c158412df752247e8442bd449d5e *R/rplot.R
01cdc567fe62afa2ca071735550712ec *R/rpoh.R
d43bc86c6d6c90f3725863a10299dcd0 *R/rpohhsphase.R
f0727c19ed0e27419f830bb1563dcb7f *R/simulateHalfsib.R
ca73143c299353bcc11f8b929849d4aa *R/ssp.R
bf93a2a3b97ae49d93a84ce7835422e4 *build/vignette.rds
168c3c8ce11ecb4ca196ac0978a4953c *data/genotypes.rda
dcfad65640df58767f04322d094f6a84 *data/map.txt.gz
6e2adec868a9c37f3b6d2ae26be8ca73 *data/pedigree.txt.gz
7760e822405e2eded1be3d91e2595490 *demo/00Index
19b72c690e50b30af50a3decd4c93575 *demo/hsphase.R
1cca785a3bc71987ecf67b80efdc72e7 *inst/CITATION
bbb1c5781055f42319dfe68d85b99e48 *inst/doc/hsphase.R
b896622ffcb3a746ebdb122a6184ab23 *inst/doc/hsphase.Rnw
de884d0d02778ea79c974990676d9827 *inst/doc/hsphase.pdf
6ab99072aa863b653e29315b81d690d3 *man/aio.Rd
ba4eb55ea0dd80fcc215a02c7d4b38ba *man/bmh.Rd
422bee2d680123ea3bfe71f3117b6ff5 *man/co.Rd
3845b3ff28188b387d1c036ccd219e62 *man/cs.Rd
921589987cfbe874ead8ac8e1cabf76d *man/genotypes.Rd
6462991909c979989607434d64e4ff2b *man/hbp.Rd
1d3fea51b1544ffd1924eb47eddad5db *man/hh.Rd
a2a587ebfd2ba12bb89ec0fbe638c5d3 *man/hsphase-package.Rd
eb62b9c12df019bfde392acda7a1033c *man/hss.Rd
9d33f11fe6a3bbabc93c8a8723b1501f *man/imageplot.Rd
6c14d7955a2616ecf4cecd6d9987785a *man/impute.Rd
59209c222d33c9bc743c949b5e13fa2b *man/map.Rd
39dd407532debdaff7ae462bac6574b2 *man/ohd.Rd
40f4620a3ba8d176bd454c67d7b12e0f *man/ohg.Rd
cfba8f09a5c96291facdb60759ec4bdc *man/ohplot.Rd
0bdd0d8fa0e3916e968f7f83137b2f78 *man/para.Rd
fb1ed6acca0b790da654fff176475e6b *man/pedigree.Rd
bf818b2c0b8aba0f9df4b3b9472e38cb *man/pedigreeNaming.Rd
95364db12b80a05fcd03cc108fd01b44 *man/phf.Rd
630743975a75972aca2889cb1e011cfd *man/pm.Rd
f69227865c2b949c61ec1751ea7cb105 *man/pogc.Rd
b8c4dc05fe01d41b2e9261deb8eab3da *man/readGenotype.Rd
c358934ba46de5223d615d67cbcb831b *man/recombinations.Rd
a3a4922c90193dba6ca942da9d22e0c2 *man/rplot.Rd
a2c14fc1623bfe6bd95d63facb95f7c3 *man/rpoh.Rd
3fa5ed9525f043f609666f131d3f46b6 *man/ssp.Rd
a294175a12318779b5d3c81a25a25943 *src/FastDist.cpp
241c74748b7190e58bbfb3dc6ce39e8c *src/FastDist.h
38d17c253bf4187c8da7dd5821bc9e5d *src/MAF.cpp
411580eba1855b456b684f9c07ceb2e9 *src/MAF.h
b274c3906ac59a71ab1d323b6648fb8d *src/Makevars
a73031cbe7d6aaf0bd22e20f6526977d *src/Makevars.win
c696be6cf2c23a93a594ee6527448f08 *src/Ohd.cpp
342a62cc195a0719ba4084d9ae56da77 *src/Ohd.h
69d6dba04e4abb81254404a5ab512314 *src/TypeConversion.cpp
1dd0bf5fe3dbb35a02c71cd36bfe7449 *src/TypeConversion.h
a1ddaea335f233b0cdb1a5776acab0fe *src/block.cpp
306d4a8b6f997669e7d6891b80ddd9b7 *src/block.h
fc8855186f563064f1315fde0df482fe *src/block4Phase.cpp
d0b3cb9ed237f674658b212aaf5e5f38 *src/block4Phase.h
b6db2f8b5484556fc0d3d211f3fe2715 *src/co.cpp
6618f9b5b9bc98c0c5373b4a24e9e8b9 *src/co.h
ac1ce5593ba91ca09bee5d9f9c7a4fac *src/diag.cpp
e56785e158a1a4505fa8562eab7b81b2 *src/diag.h
740592092a7d36e147a03db85facdde8 *src/hsp.cpp
5396d87796e8d0566a87319a55820f98 *src/hsp.h
4c5fc0aca52a73776a980304f46d874d *src/main.cpp
ab2703828920c9bf459344fce6295b63 *src/memory.cpp
6fc989105df8e19021ff908f61c98db8 *src/memory.h
00d780ec7a77d2000f51f599a5407a4e *src/oh.cpp
db89ed7e5ed5f3da77bafcca0f50e69b *src/oh.h
ae83c9754e4f05f6848f8f82ade8a54e *src/ohg.cpp
47ce2dc11f764ccd36f01ee731436114 *src/ohg.h
8f0f2507b3495c3fa27c71c3fce5f54e *src/ohp.cpp
bc61bfe2036dd2081dc8737e64cf623c *src/ohp.h
e51b7a6d63882166def909031e26978a *src/swDetect.cpp
0642a1452f22181d6c996af216f6c391 *src/swDetect.h
37e53a9ca84012af6516ca47267698c1 *vignettes/hsphase.Rnw
