af270cc2cd47e05a69b395994b48b65a *DESCRIPTION
d70e9fa886b022d6a4081cbc8987c1c8 *NAMESPACE
ca56782040ab0c4cac8dc3545a883cc0 *R/AllClasses.R
de390821e008533dded8935a3c29652e *R/AllGenerics.R
46e310c21fcf6ae858312e3661ef1067 *R/Constructors.R
ca7224be4542d03f96e0d70fa1790152 *R/DEMICel-methods.R
e5b01b714fb4b9246430f77c76291f04 *R/DEMIClust-methods.R
337e5ee13078332e7f473f0579ccae20 *R/DEMIDiff-methods.R
24ab01ce58445b652ff48942f85ceb76 *R/DEMIExperiment-methods.R
5a0b54b61a3186f7294b479543b33b3b *R/DEMIGroup-methods.R
6b798415a4bd6ee3217217dae576c30c *R/DEMIResult-methods.R
2f97bb3c993b5fd6af681cfbc9094d7d *R/cluster-methods.R
10fbe2170024c65d380eb23ef10b7805 *R/custom-methods.R
dc9f846ff1926d9f6ba0fce884d8e89e *R/cytoband-methods.R
9c87a05139363241c861376a671c9b1e *R/diffexp-methods.R
fc59dbed6adec4ccd9f13eecb9e5bca9 *R/messages.R
36a1752877e136189e4bfd1609bd20c9 *R/normalization-methods.R
7ae610a3e6d5cc70367bad267b20f71b *R/other-methods.R
a6d004aa6a0f803f658b8b4d9c4532d9 *R/zzz.R
4f70ffaf15b30bdea39eb971c8130046 *inst/doc/demi.Rnw
2b402c3e41461f66f177c9ad154f96d5 *inst/doc/demi.pdf
1c4fdc4d59abfff50f1c54bac56412e6 *man/DEMICel-class.Rd
522dcd63eab2333fcb7ecc54aa394fab *man/DEMICel-methods.Rd
78749187893e032e300993e5a6e1a24b *man/DEMIClust-class.Rd
9b0987017389be1647257dd5cb9356c1 *man/DEMIClust-methods.Rd
c2c962353ae3724046b2657891785aa4 *man/DEMIDiff-class.Rd
84f44df3220380934e314daa1d4eba37 *man/DEMIDiff-methods.Rd
bd4ce19d7916782ee1a0cff050d60bdd *man/DEMIExperiment-class.Rd
742e88445ec9c5ede3045c2aaf9659b1 *man/DEMIExperiment-methods.Rd
451d18d1920800d13ab704b64fa9972d *man/DEMIGroup-class.Rd
1eede7217c6ee18a5f83135c8648d583 *man/DEMIGroup-methods.Rd
45f20e20a553a5c76037fcd8b8a9089d *man/DEMIMessages.Rd
19af968a39c28b8e9a665ab17ba1687d *man/DEMIPathway-methods.Rd
2a58726de45b9ab23c5551840e8eebc5 *man/DEMIResult-class.Rd
c383945e5fa4618e89e52f252a2fa828 *man/DEMIWrap-methods.Rd
1d343415bef120be189b7b811ee3a94c *man/addCustomTargets-methods.Rd
289316c835f798a1a08b69a26c28a31b *man/addCytoband-methods.Rd
2e3c3a075f3948be6a293f5ae1e32639 *man/adjust4maxprobes-methods.Rd
f412b499cafb6101a9cb544849bfb963 *man/attachResult-methods.Rd
d22baa2b55923b692b4cad2d40d2c2fa *man/calcHypergeoExon-methods.Rd
9cd86a4c4a0c91ad97acf63b78e61fdb *man/calcHypergeoProb-methods.Rd
de12a8ba0b766f20ebbdff7e91602fc8 *man/celMatrixNormalize-methods.Rd
fcd452ee858945cf9cb8a0fffe797e65 *man/check4probe-methods.Rd
02e9222ee9c6285bd4bb555c10f1ea1c *man/check4target-methods.Rd
99387ae8944c3e70e35558afaa2e8ae1 *man/checkDEMIExperiment_analysis.Rd
dcbfdc306a2c180d1e0f13651f4ade64 *man/checkDEMIExperiment_celpath.Rd
cd69ca57ec478113aec195956ed736da *man/checkDEMIExperiment_experiment.Rd
ad5d3068ae4a822e27cc851f575a4ab7 *man/checkDEMIExperiment_maxprobes.Rd
99e58866e9d9e7f2a7785beef9605692 *man/checkDEMIExperiment_maxtargets.Rd
7bbc52e1d52929f031ff6a7463c3c1cf *man/checkDEMIExperiment_normalization.Rd
4b1b39fe371e0877b8bfc9eb2e2b5921 *man/checkDEMIExperiment_pmsize.Rd
33048962fefe156306d6e31e45e7aaf0 *man/cleanorganismname-methods.Rd
4dade2c3d7624ddf10eaa44e2de1b418 *man/cluster-methods.Rd
a48e293415ebfb85f2acc8301a33134d *man/createGroup-methods.Rd
04251dbaf4eaace144f31f9ec77cdda1 *man/customObject-methods.Rd
42c899eaa3ccdb217a84baa89eb83ea5 *man/demi.comp.test-methods.Rd
64803d01e341b2617f953b867c5dbec4 *man/demi.t.test-methods.Rd
c5935fb4c73857fb80fadc840418c0c1 *man/demi.wilcox.test-methods.Rd
e59d6c915937db41e70525d0afdc4ceb *man/demi.wilcox.test.fast-methods.Rd
000a3550dbd6d5ee9fd3a3333bacc76f *man/demiequal-methods.Rd
30fd2fa90b5f492e8b51bd7236770042 *man/demisummary-methods.Rd
eae3a8055da81d29b05bde0a12124e80 *man/diffSpliceScore-methods.Rd
12b6b9452b825c0126d61b95c06aeb6e *man/diffexp-methods.Rd
d7995990c861fe7939650751b8082c70 *man/findCytoband-methods.Rd
5597f20c354cbf6f425f75ea935334bb *man/getAlignment-methods.Rd
e079c0ca81bd06ac3cbdd900e7a24037 *man/getAnalysis-methods.Rd
f4bd97bd8d5ddf5cebde089e04945bbd *man/getAnnotation-methods.Rd
790dc6e2c24589e2c9918bb3d326b3f7 *man/getArraytype-methods.Rd
c4f8879f54b2ca62a7aa885f5a5ae0d7 *man/getCelMatrix-methods.Rd
a7bb0e61f30f6c4b7e311cf6f332a38a *man/getCelpath-methods.Rd
ef2f10b850985973ab96c2f2df6e71bd *man/getClustMethod-methods.Rd
18db0b5aff331b9280ebf125fa43493e *man/getCluster-methods.Rd
3ecd29ebeb0970f071d471c87cac2906 *man/getCutoffPvalue-methods.Rd
7a2973ecbe58eaad2f5620e2e053391e *man/getCytoband-methods.Rd
c10c3e9154fba66901993a0b98e266df *man/getDEMIClust-methods.Rd
c93e003d82f4b764f9b7ee309af6f72b *man/getExperiment-methods.Rd
9e706dc65a6c8e475cb8be4f435d1d5a *man/getGroup-methods.Rd
d2e1c9e9785524e38fc01a70ae0d2929 *man/getGroupA-methods.Rd
bd84c23eadf8ea74448ef9d1751560f7 *man/getGroupB-methods.Rd
944b5f2ce3c7874d738643d878d11e1b *man/getGroupNames-methods.Rd
874806fc8c77c3838cb147e753bfef05 *man/getIndexA-methods.Rd
cb3401236dbfa8cec914bf2854785c63 *man/getIndexB-methods.Rd
592b1c4b2b977fa8ac087e47dd60c4a4 *man/getMaxprobes-methods.Rd
5dd967dba18bbb8d5134a58d54f3ccb7 *man/getMaxtargets-methods.Rd
a620f25cb1b6347c41a83b6a79585782 *man/getName-methods.Rd
46b830a99e00dde9e45c7cd255a61948 *man/getNormMatrix-methods.Rd
6873e84d36ef3af9c1e8467c53cd862b *man/getOrganism-methods.Rd
b01fa19fcdf25589bf9f20b64488411c *man/getPathway-methods.Rd
b85e9a4d56dc70fa4168b3db8b102f61 *man/getProbeLevel-methods.Rd
c0bb60cb9ae0500b9a605717114bbb9b *man/getResult-methods.Rd
9415c0cf839598b48ba4afa84fbd7432 *man/getResultTable-methods.Rd
1b062fcc9a27b1ff968cc9378632787e *man/getTargetAnnotation-methods.Rd
a059f4ce4794910583360581c15b3513 *man/getTargetProbes-methods.Rd
32f26f92bb5753daded2e0d1d4794833 *man/initialize.DEMICel.Rd
789450f8b59e1e5a896204c49a0664b2 *man/initialize.DEMIClust.Rd
ae465b7741f4269f78e7ee9ab398bf97 *man/initialize.DEMIDiff.Rd
d7329e08ac31e2cd0ceb49d6115ec078 *man/initialize.DEMIExperiment.Rd
ee00cba04ace7ac5e2c15aad8242c545 *man/initialize.DEMIGroup.Rd
9befaee91418f3525cf9c023a5fb3f8b *man/initialize.DEMIResult.Rd
0ae40eca7668bb7f4d9544e1f5698421 *man/loadAnnotation-methods.Rd
4062bfb6e956ba63d7b7dec1a70f952b *man/loadBlat-methods.Rd
e58c5a416e06bae347809ba72988006d *man/loadCel-methods.Rd
4192df22682a1f54eb506bfa4c0530da *man/loadCytoband-methods.Rd
d2c29146b04a512a73f3d702c1400892 *man/loadDEMILibrary-methods.Rd
6be4a291f008c639731749644ef5c619 *man/loadPathway-methods.Rd
8e18f1d7603dac4b3297901463831a30 *man/makeDEMIResultsTable-methods.Rd
c6653e8e3420bd89bc54dd5e5aa5ef9d *man/makeUCSCLink-methods.Rd
2373dc9dab03af69c90f0d51c6277283 *man/matchExonGene-methods.Rd
4cb39b31835ae9fb53601c2a7c6ba4a8 *man/norm.quantile-methods.Rd
d63ee86768d6004f07c966a1c642baeb *man/norm.rrank-methods.Rd
4299e87f19c1bdc3c0a122c3b03bec96 *man/probe.levels-methods.Rd
ee9cf81cfe4f88925b5e9744515a0a0e *man/probe.plot-methods.Rd
da045b64db3f50d853b5c278e08c1c6d *man/totalMatches_all-methods.Rd
599cc2b500bcaf9703069b065cb4892e *man/totalMatches_cluster-methods.Rd
b782ced682cb113c16ac8cdca4e07cc3 *man/validDEMIClust.Rd
6f3f87c439df47a292d80adc440547c6 *man/validDEMIExperiment.Rd
3d1ce9f79518132445991d158323ec9e *man/wprob-methods.Rd
2c4a57de4ae882985871c8b35414ad14 *vignettes/MAOB_probe_levels.pdf
0219e5436c0acac4738c6f932827765b *vignettes/MAOB_probe_plot.pdf
4f70ffaf15b30bdea39eb971c8130046 *vignettes/demi.Rnw
4e9301a4d643a699d28525ff3d091c6b *vignettes/references.bib
