f034f5dbedec218f653f9a6b262ec6f2 *DESCRIPTION
739c98c7b064037421526b2ba4e9bbfd *NAMESPACE
e31036b940d7efce5ccf2c6d9004543a *R/RcppExports.R
61fe4b8d3ab05d52fff62784bb0891fa *R/cytoscape.R
954b43e45ea3132f0d09b9c028357072 *R/data.R
59993e5d81ef327167d0766e26e416c0 *R/gen_rnaseq.R
f34d5d5b80c8d234bb5fd82cd8a672c7 *R/gen_zinb.R
4dbf521f59af80989b2510d3528f9af2 *R/generics.R
8c6baec171caad37626ec74bdbcd95f5 *R/ggm.R
211f8da2a0aa54f06458525170c08e52 *R/imports.R
5622288422d24792ed96edb97f5cf329 *R/misc.R
43b2445934266c624c8a4a68593392ea *R/modules.R
99705c7fd0df303158be8af6037dd566 *R/networks.R
9012b63aa02bdf88e92d713e431ba46c *R/plotting.R
91d0b48533fa89b66f64354e99c07a4a *R/reference.R
a96909abf2c09fdf2c3079e6cd526660 *README.md
b4b8061b9d0ac9812995a11cc2941a51 *data/datalist
d4585f249ad641082b8906d8b7b13727 *data/reference.rda
a382bf885ba301748f7b2c923b6ff210 *man/add_modules_to_network.Rd
f1c40061dcf2a84b8e9667fe37ad0f09 *man/add_random_module_to_network.Rd
d6a69f5995c4cab2655495cdab5916b3 *man/all_networks_contain_same_modules.Rd
ca952c48528f008a6d4968cd9965a5bf *man/all_networks_contain_same_nodes.Rd
c9889c3550a890f8013f95fac70ef1ce *man/as_single_module.Rd
65b2345328ff53af9a0cf03baacd8ba3 *man/check_adjacency_cpp.Rd
748363fbf7ab3d4becbbe8563dd8a08c *man/components_in_adjacency.Rd
64adc4353b56cc9a0ecc8cbf382d3e5f *man/connect_module_structure.Rd
d985637c97811d3406030f5b173fc507 *man/create_cytoscape_file.Rd
aec47b381cc0f5be4ebd981b5423a000 *man/create_empty_module.Rd
e8719fc96daa33496982328b11a194e6 *man/create_empty_network.Rd
e53c0ab62b05145bfac7d4916a4854a1 *man/create_module_from_adjacency_matrix.Rd
2f6968ac6f2d826c07a3ee85b7ac8e22 *man/create_module_from_association_matrix.Rd
b248a4c965739e6c8f9356a3aebf4249 *man/create_modules_for_network.Rd
040414cf10acf514eaf169aabf25d4ec *man/create_network_from_adjacency_matrix.Rd
4e449a6651f843747f896eb50565fb87 *man/create_network_from_association_matrix.Rd
62e941d3d7d6908db687ba0f14e00443 *man/create_network_from_modules.Rd
7705360ee960bd5bacb0f29aa83567bc *man/dzinb.Rd
143f14a2dc0afc2070830d5fe54b4251 *man/ecdf_cpp.Rd
57c979bb86d36ec3109637edf944f14a *man/edges_from_adjacency_cpp.Rd
4ecdcc7b93874e16014366e1bbf83185 *man/est_params_from_reference.Rd
3f7ba908bc29d454c03edb530003b4e6 *man/gen_gaussian.Rd
93bb78ad8de672fe4499e29424ba640a *man/gen_partial_correlations.Rd
643e5543e7982729c20e4c4e463bd48a *man/gen_rnaseq.Rd
e48b6e8581184b82bf24e46786b3f42c *man/gen_zinb.Rd
4e3a488d46fbbaa6183874faa321ab80 *man/get_adjacency_matrix.Rd
67c9ef4995e93688c010b0f6b2d3a1bc *man/get_adjacency_matrix.default.Rd
b3d832ce3948e5d5cd8032f85e8b1e49 *man/get_adjacency_matrix.matrix.Rd
3181b9d87adab73c09e3f7012e92ec8d *man/get_adjacency_matrix.network.Rd
c7dc001bf86e6faea9160eee2ac97184 *man/get_adjacency_matrix.network_module.Rd
dae2b290cd5e0a5915c2f30b9467a886 *man/get_association_matrix.Rd
b63ad440d61a367a2649ee70f410dd85 *man/get_association_matrix.default.Rd
12d2ff131ca589895d0e1e59d6e1907f *man/get_association_matrix.matrix.Rd
b02a1fd4b64e95fa79d944fc2ebe026e *man/get_association_matrix.network.Rd
788e7bb7a2d871b56cd691f1dc36c11d *man/get_association_matrix.network_module.Rd
21b9401f0e5c4b174db7572422db76f2 *man/get_degree_distribution.Rd
d4b89580298fec1dcf89290b0e22459a *man/get_edge_weights_from_module.Rd
2a6639a4d0e38cb973a56d19d01e8d49 *man/get_layout_for_modules.Rd
82d82a9449bf740ab1cc793d1f741058 *man/get_network_arguments.Rd
1522a9e3443dd7b0878a44ebf73acdf3 *man/get_network_characteristics.Rd
64c34fc5e3605730bf115b76e96894a4 *man/get_network_modules.Rd
1c286fb1130b4c6f629b506ae7d46ffe *man/get_node_names.Rd
b5f72bcf53cf2fa23533d06955f583f9 *man/get_node_names.default.Rd
4e01ab960af46cc0c37d38758c7d7795 *man/get_node_names.matrix.Rd
a67d187431e61cbb889f1323dd7123e9 *man/get_node_names.network.Rd
fc18fe9ca7e12f02d37af6ae6475abb7 *man/get_node_names.network_module.Rd
e30e6bdf46e06c34cb4b22cbe3249a88 *man/get_sigma.Rd
138750c9fa1c0f3cf8a600cd8b54ef5a *man/get_sigma.default.Rd
aef2a6a9f5223602032682b71db6c30d *man/get_sigma.matrix.Rd
d61ac329fa7f0741c6c1a10dd84e7a67 *man/get_sigma.network.Rd
b47a90ff4776eb61f2372724f6e9ecde *man/get_sigma.network_module.Rd
e33bb3aad3ba2017f458e7bb65c703e2 *man/get_summary_for_node.Rd
048bfaff9815a00dd13f6e2f013fa37a *man/heatmap_network.Rd
0b06a678f57acd1aef9e8cc49aa97046 *man/is_PD.Rd
37561fbad526138ba86e79778498378b *man/is_symmetric_cpp.Rd
65ee8b42b3f7683104164aa2c5a0174d *man/is_weighted.Rd
93edf7b6a51786aecd52ec65f025a081 *man/is_weighted.default.Rd
6428900d8237049e90c4663979c667a4 *man/is_weighted.matrix.Rd
e8e9a090faed9c66a4b39c1f9de86416 *man/is_weighted.network.Rd
ee69f0c0fd300ea380378467c4afcb73 *man/is_weighted.network_module.Rd
dd27c01bf3dbf0728d7a91d87a5e6a3d *man/perturb_network.Rd
4ba9433e4951b6100d64d967b78c0d60 *man/plot.network.Rd
02c62887b711a836e6cf5eff32345efc *man/plot.network_module.Rd
d4cf088d9939bc38819fc20607d59e3b *man/plot.network_plot.Rd
5e63d0ceab3ed21a412ab26d18077cdd *man/plot_gene_pair.Rd
131f539b0889b01c76147c8e8ffa1be1 *man/plot_modules.Rd
32819150617a889c67db1240ad1e5913 *man/plot_network.Rd
68ab23345e18911ad383f0b8758e8b17 *man/plot_network_diff.Rd
1c67914bab6e6a9a89e681fd08abddd7 *man/plot_network_sim.Rd
acb2db7ac67eeae8e057f72d480eaa15 *man/print.network.Rd
4b3204584ca2712785c522519f9919b5 *man/print.network_module.Rd
594edd74e9f52fba40c7a4bb189d4f67 *man/print.network_plot.Rd
f27f12e78907727b958f853efea3de43 *man/pzinb.Rd
f26cb42408cf785f1f6b7c821204ad7f *man/qzinb.Rd
52b3e7521ad2bcf6ae6a807548677c07 *man/random_module.Rd
df53c3fba64634975eadd23db19cabea *man/random_module_structure.Rd
d02306f06dea33276e48f62bae80b6ef *man/random_network.Rd
05bd85a37c46a5fc4fe6da6284ae4a29 *man/reference.Rd
dcf4cef927332cf83efb0cb8737a3e20 *man/remove_connections.Rd
273407a42a94486919a8fb687c043f2e *man/remove_connections.default.Rd
51eb2c24d73edd1f110b7aa0beb9372f *man/remove_connections.matrix.Rd
fd0ced04b2da827365c8ec44144930bc *man/remove_connections.network.Rd
3521783c245ca8710ac6b018b68b1e8e *man/remove_connections.network_module.Rd
4aa841c12e58e80e9db102321b5a1572 *man/remove_connections_to_node.Rd
6d71b9397fffe27bf9a8e0366fbb0f72 *man/remove_connections_to_node.default.Rd
9b471acecdc814d2f927f4f9209983e7 *man/remove_connections_to_node.matrix.Rd
1d1253462d5eaa2f6f1db9e03d0a15f6 *man/remove_connections_to_node.network.Rd
34272e6fb884f7ca1456a12f6bf057c6 *man/remove_connections_to_node.network_module.Rd
987dc556b74dfd5f5610333563243e97 *man/remove_weights.Rd
c48d1f6483e99355395f1e008097b061 *man/remove_weights.default.Rd
86589fbf8710b5177c637b73aeab534f *man/remove_weights.matrix.Rd
60e0eba9b456f4edf42cfbcbb834236d *man/remove_weights.network.Rd
96a8032b4c48f80741104094173c96bd *man/remove_weights.network_module.Rd
a826ec9fb0809320174d09d14c88c77e *man/replace_module_in_network.Rd
050fdb32fdc2b91b33c4c7769ce8d0fc *man/rewire_connections.Rd
c9e86a5e4d33d324bf4f769af824018b *man/rewire_connections.default.Rd
0c31db3aae9ef119ddb004901bad6ea9 *man/rewire_connections.matrix.Rd
4421693e6dc3e6417b30868e28116157 *man/rewire_connections.network.Rd
f3b68041b5693c0c6912c1fae5af6232 *man/rewire_connections.network_module.Rd
35af14d1d5478166bc4baf28b2c193f6 *man/rewire_connections_to_node.Rd
bf37537ed3e3c3ba20c1974c6f718fa4 *man/rewire_connections_to_node.default.Rd
b4c6974ab26bf6beff1b4623ce139dfc *man/rewire_connections_to_node.matrix.Rd
8782adaccdd3a5c6339ad6581988bc4b *man/rewire_connections_to_node.network.Rd
38a3ba28a9532cf8aea27c1e6b027b03 *man/rewire_connections_to_node.network_module.Rd
7cd2cba8de27198e05eb7057b79f2023 *man/ring_lattice_cpp.Rd
e553cc0e6490cb791bbac6ba9200e30d *man/rzinb.Rd
b02b5919ac694c8d6ea9e92dcf80578e *man/sample_link_nodes.Rd
9854079376fad8cb59cecdcf44fc47df *man/sample_module_nodes.Rd
33b265674d6553119a559501fa8cc859 *man/sample_reference_data.Rd
6662e44def8a482f9b4a5d6e69b1c4f1 *man/set_module_edges.Rd
5687d69a9ae8826ff05d38b0f3ec1929 *man/set_module_name.Rd
85b22047848a3fd9c5774e9104cafb14 *man/set_module_weights.Rd
aef21fc07e147f3d3635644fa6e970e4 *man/set_node_names.Rd
9900e042c98cb18aebe854ef8c0142e4 *man/update_module_with_random_weights.Rd
5a160aeffafe3a2e7838201eade8a4f2 *src/RcppExports.cpp
8ac893d90a7ee934950c18359d87abd6 *src/components_in_adjacency.cpp
7ad84363acee17dc2afbb7f6ecdadd29 *src/ecdf.cpp
9e6d82fc2726148d889f628f7c601efc *src/edges_from_adjacency.cpp
f2c4f33823e3f5891a378be0a7a49339 *src/is_adjacency.cpp
8bbdf76c65d50c168ae91b8213c31958 *src/is_symmetric.cpp
000cabc44802e66fc70b4e3bea3a901e *src/ring_lattice.cpp
b183bcbdfa89513916b8c14518039677 *tests/testthat.R
de88dd53a936aba5e9fe17b2e1d36cef *tests/testthat/test_cpp_functions.R
c5aea72634dcf96407f89bb6b6801b52 *tests/testthat/test_create_network.R
b268e578850dbc8a0f2310526ed101a7 *tests/testthat/test_gen_counts.R
a762f4de94ae20524dc9d8441a6deb83 *tests/testthat/test_network_node_names.R
174e8fa7c5905ba387653922e7215ec0 *tests/testthat/test_network_structure.R
7ae25dc5db7d22af0eff842374c9a158 *tests/testthat/test_qzinb.R
2c0e0dcfc55bab474358a0bb3c444393 *tests/testthat/test_random_network.R
1f86fcb4da502f2fad59879e2443d1f2 *tests/testthat/test_sigma_matrix.R
