# Generated by roxygen2: do not edit by hand

export(add_seq_context)
export(add_transcript_strand)
export(annot_vcf_to_476_catalog)
export(annot_vcf_to_83_catalog)
export(annot_vcf_to_89_catalog)
export(annotate_id_vcf)
export(annotate_sbs_or_dbs_vcf)
export(as_catalog)
export(catalog_attrs)
export(catalog_row_order)
export(categorize_1_justified_indel)
export(cbind_catalogs)
export(change_476_type_ids_to_open_intervals)
export(change_89_type_ids_to_open_intervals)
export(check_and_remove_discarded_variants)
export(collapse_catalog)
export(infer_trans_ranges)
export(is_catalog)
export(justify_id_vcf)
export(justify_indel)
export(read_catalog)
export(read_vcf)
export(read_vcfs)
export(seg_simple)
export(segment_simple_cpp)
export(split_vcf)
export(subset_catalog)
export(transform_catalog)
export(vcf_to_dbs_catalog)
export(vcf_to_id_catalog)
export(vcf_to_sbs_catalog)
export(write_catalog)
import(data.table)
importFrom(BSgenome,
  getSeq,
  seqnames
)
importFrom(GenomicRanges,GRanges)
importFrom(IRanges,IRanges)
importFrom(Rcpp,sourceCpp)
importFrom(data.table,
  as.data.table,
  rbindlist
)
importFrom(stats,
  end,
  start
)
importFrom(stringi,stri_sub_replace)
importFrom(utils,
  head,
  write.csv
)
useDynLib(mSigSpectra, .registration = TRUE)
