323a6f750f07ede152ef3c8e4c8c194d *ChangeLog
1acf755cb8864de1573a8a597ef5b3f2 *DESCRIPTION
db8f0cb1bb4332c9eda3bb339836b36b *NAMESPACE
40d160111135cba5cb75b0fbbe4915ac *NEWS
11034bc4a1f60302ce7c6b4393133e3d *R/geneModel.R
f6439b5f805f40c70ecb92e1bf5a14d2 *R/refGenome.R
1c3fda65a6718de17d68f572acf101eb *build/vignette.rds
c08a780da3a612c7aa47a511bb2e776e *inst/doc/readGTF.R
0e500b555919eb690d64919c396f66a1 *inst/doc/readGTF.Rnw
1141fbfecc5f43e5b7a0076ba2f9522b *inst/doc/readGTF.pdf
0beaade560ad5400f4c58524739f34c1 *inst/doc/refGenome.R
4f8feaf047f84dbf93ab38ecf0c95740 *inst/doc/refGenome.Rnw
e40c900fa2d8248544dd64c18dfe8e17 *inst/doc/refGenome.pdf
ab04164a9caa6107dd4e4e6966f8a8e9 *inst/extdata/hs.ensembl.62.small.RData
bf447428806b7c2f0412d088185561be *inst/extdata/hs.ensembl.62.small.gtf
46d1f6e0df819f75652989cf95eeba05 *inst/extdata/hs.ensembl.76.small.gtf
4586ebac3dc57cac8e4babb48e90d4c4 *inst/extdata/hs.ucsc.small.RData
d9a1f4a8091bd093073304859f108532 *inst/extdata/hs_en82_grch38_small.gtf
10d2ddbd53c1b9c788f77ee067dbab4b *man/addIsCoding.Rd
90ceeac728fc3e60d66efc65280b5379 *man/ensemblGenome-class.Rd
21dcea8c792608477436ede089af53bd *man/extractByGeneID.Rd
10697f4f374741482fd3bbabb5081e03 *man/extractByGeneName.Rd
4657a136f91f6029644d76159b5d4e5b *man/geneList-class.Rd
29ed60a3123f25a62ddec272286a9599 *man/geneModel-class.Rd
38cbb281fd85c2d960cee321c15d4ba6 *man/getGeneId.Rd
a203cc277d81743136f1457b6402d9ed *man/getGenePositions.Rd
ea21d153712ec73cd08df1306e9ac041 *man/overlap.Rd
989a7c8e28d9f25a6c53849b6806deff *man/overlapJuncs.Rd
333ad10436bbd751915569cde854c305 *man/readGtf.Rd
94a3e7df3de4dfd9ec1e5c3e90d830af *man/refExons-class.Rd
a5acd9b5a4cfd7a4ab92a560fe4cebd5 *man/refGenome-class.Rd
960d485dc9d2fab2d866f324e6df9c57 *man/refGenome-package.Rd
6556c32567206a64c981f3a6a391a775 *man/refJunctions-class.Rd
0f351e8926cfe7199149a5591019ebcf *man/saveGenome.Rd
ec7f6a22d1e8f49e3ecd93d571792e24 *man/transcriptModel-class.Rd
580f3145ac9740ed030fa0c3ea51c8af *man/ucscGenome-class.Rd
e618561efd49a8cb755a3a1b79542a5a *man/unifyJuncs.Rd
c7948125347cc01440a4c76d40835d8c *man/unifyRanges.Rd
32865000dcaed4ee0464b24f8e61d4f1 *man/writeDB.Rd
83d2b1d956085bc378769687e0c2725c *src/Makevars
83d2b1d956085bc378769687e0c2725c *src/Makevars.win
53c23833e33db39a9eec0f2a0eafdcad *src/data_frame.h
dbd2571a76fd324cff266e46e02d377a *src/extptr.h
091ef98102ebb28549d4ece01f473d7c *src/grange.h
28536b480aebdca42b96f16708850f10 *src/gtf.h
cfa52fd61a8cd147040b199438ef9a5e *src/refGenome.cpp
5e35eeae41ce250c26cec97068965af6 *src/refGenome.h
c78104b1bd888edbb2bb22d70b8750f8 *src/tokenize.h
be63391aefd8e687c7ef6c23e68e667b *tests/test-all.R
0e500b555919eb690d64919c396f66a1 *vignettes/readGTF.Rnw
4f8feaf047f84dbf93ab38ecf0c95740 *vignettes/refGenome.Rnw
