d20357f80ff0a9e059c9e11380df0ec6 *ChangeLog
03cdd9e7b7cb4830e932b7be9310001b *DESCRIPTION
7e4d30ae56e1873557dd349945e906a5 *NAMESPACE
40d160111135cba5cb75b0fbbe4915ac *NEWS
11034bc4a1f60302ce7c6b4393133e3d *R/geneModel.r
70b0f5b5a5e015129be00e1a37706fe8 *R/refGenome.r
e878c84252b5c76e1189566943b92507 *build/vignette.rds
c08a780da3a612c7aa47a511bb2e776e *inst/doc/readGTF.R
26b8d014653ab9db55e916fe28354d78 *inst/doc/readGTF.Rnw
ba9c767e648de8afbd3fa4dd2f270510 *inst/doc/readGTF.pdf
c1618662ce24c37f255a8fae08319f26 *inst/doc/refGenome.R
8b966b87faffd09f72976cda29c98fe1 *inst/doc/refGenome.Rnw
e3d3588b1238013cbcbd5c9e4d2059da *inst/doc/refGenome.pdf
ab04164a9caa6107dd4e4e6966f8a8e9 *inst/extdata/hs.ensembl.62.small.RData
bf447428806b7c2f0412d088185561be *inst/extdata/hs.ensembl.62.small.gtf
46d1f6e0df819f75652989cf95eeba05 *inst/extdata/hs.ensembl.76.small.gtf
4586ebac3dc57cac8e4babb48e90d4c4 *inst/extdata/hs.ucsc.small.RData
d9a1f4a8091bd093073304859f108532 *inst/extdata/hs_en82_grch38_small.gtf
fe72fc088ebe634358b06cf969f3db7c *man/addIsCoding.Rd
0aba041db164841d38b9e67e482f829d *man/ensemblGenome-class.Rd
21dcea8c792608477436ede089af53bd *man/extractByGeneID.Rd
10697f4f374741482fd3bbabb5081e03 *man/extractByGeneName.Rd
7dabc96c997f71afadc714da2c81b1bc *man/geneList-class.Rd
1948ccb6f3614fed7c8f82b90bd52928 *man/geneModel-class.Rd
7ad294981c49dff2cdc529295ca87824 *man/getGeneId.Rd
26e62a024d301ab85644310f1fc98193 *man/getGenePositions.Rd
ea21d153712ec73cd08df1306e9ac041 *man/overlap.Rd
886b47b5bb5cc3b59efb97b5ac11e689 *man/overlapJuncs.Rd
8252eacfa9b3f8869b2e5edcdc8cc5b1 *man/readGtf.Rd
59b3df9b2c1e61d3897d6402b5ad4f0e *man/refExons-class.Rd
05c69b3df8069e4f8efebdcec385e068 *man/refGenome-class.Rd
285187977c36903dfda79f940d93e98b *man/refGenome-package.Rd
19cb80132011f8f3a30f1d1e669b3c19 *man/refJunctions-class.Rd
a055b168fcbac2a824cf27c7f7ef8372 *man/saveGenome.Rd
08cc304cb4e99d76fa5382bbb0b7553b *man/transcriptModel-class.Rd
7429c7a8229fac53f3525b6a24baa3ec *man/ucscGenome-class.Rd
15484d51135267fb174ae47204fb3556 *man/unifyJuncs.Rd
d1e14305bb00ad316b92ce405e027cec *man/unifyRanges.Rd
81737543c591e43d48d79419e6761181 *man/writeDB.Rd
83d2b1d956085bc378769687e0c2725c *src/Makevars
83d2b1d956085bc378769687e0c2725c *src/Makevars.win
53c23833e33db39a9eec0f2a0eafdcad *src/data_frame.h
dbd2571a76fd324cff266e46e02d377a *src/extptr.h
091ef98102ebb28549d4ece01f473d7c *src/grange.h
28536b480aebdca42b96f16708850f10 *src/gtf.h
c51e15e96814ce1010cbdfb87e881152 *src/refGenome.cpp
5e35eeae41ce250c26cec97068965af6 *src/refGenome.h
c78104b1bd888edbb2bb22d70b8750f8 *src/tokenize.h
b1ba36d61e8669c1c0425060a0615a7b *tests/test-all.R
cf04a3456ae81ac1e4060c26a9b62fef *tests/test_overlap_juncs.r
bd1413a19c26237b941b0dde46fc2e8b *tests/test_read_gtf.r
9bb41b17e27d84e29d78e1504fced5f3 *tests/test_unify_juncs.r
0b33e124085218a783d877ff90d1de42 *tests/test_unify_ranges.r
26b8d014653ab9db55e916fe28354d78 *vignettes/readGTF.Rnw
4f8feaf047f84dbf93ab38ecf0c95740 *vignettes/refGenome.Rnw
