ca303894d762795291f9bc88786a4e46 *ChangeLog
daab7715016edc2cdaa7453c83eed73c *DESCRIPTION
0c82b29198a53addfe993adfa99734a8 *NAMESPACE
ed56ec56d9244ad6d0e2214eb96c8d3e *NEWS
5156421271a48667aafb4f6a4f827d20 *R/refGenome.r
0d1c3469c070df22521503c556bcb0b2 *build/vignette.rds
c08a780da3a612c7aa47a511bb2e776e *inst/doc/readGTF.R
26b8d014653ab9db55e916fe28354d78 *inst/doc/readGTF.Rnw
bda5a0854f874223874c22995b3f38fa *inst/doc/readGTF.pdf
d8cd123f8195ecb4eea39215de29b352 *inst/doc/refGenome.R
cad15949e7e1276f8bff38b842cbc0ec *inst/doc/refGenome.Rnw
f18a0d1432c400364497c09aa0b8827a *inst/doc/refGenome.pdf
14e45949c7b783fc1985e2330ee04542 *inst/extdata/hs.ensembl.62.small.RData
bf447428806b7c2f0412d088185561be *inst/extdata/hs.ensembl.62.small.gtf
46d1f6e0df819f75652989cf95eeba05 *inst/extdata/hs.ensembl.76.small.gtf
4586ebac3dc57cac8e4babb48e90d4c4 *inst/extdata/hs.ucsc.small.RData
fe72fc088ebe634358b06cf969f3db7c *man/addIsCoding.Rd
45d46dcfbf0c4bb5e31a68c5db1e7d14 *man/ensemblGenome-class.Rd
858b3b26ee43fddc5d286ccf5080e26a *man/extractByGeneName.Rd
994f492933e0d4a61f72b33733bb39ed *man/getGenePositions.Rd
ea21d153712ec73cd08df1306e9ac041 *man/overlap.Rd
886b47b5bb5cc3b59efb97b5ac11e689 *man/overlapJuncs.Rd
8252eacfa9b3f8869b2e5edcdc8cc5b1 *man/readGtf.Rd
9f98d354f9f0cc18aeb74ff31ebe4600 *man/refExons-class.Rd
28f439d557ee129a0b5db410e4b28eba *man/refGenome-class.Rd
285187977c36903dfda79f940d93e98b *man/refGenome-package.Rd
84a3ac087403afb8792b18f6845e663d *man/refJunctions-class.Rd
a055b168fcbac2a824cf27c7f7ef8372 *man/saveGenome.Rd
7885185cc87abf3542412f60a607090d *man/ucscGenome-class.Rd
95366f7d80696ba0b3f338f2190cb801 *man/unifyJuncs.Rd
d1e14305bb00ad316b92ce405e027cec *man/unifyRanges.Rd
81737543c591e43d48d79419e6761181 *man/writeDB.Rd
83d2b1d956085bc378769687e0c2725c *src/Makevars
83d2b1d956085bc378769687e0c2725c *src/Makevars.win
6b18a7e7cda0d9f5337d6a81243e280e *src/data_frame.h
dbd2571a76fd324cff266e46e02d377a *src/extptr.h
091ef98102ebb28549d4ece01f473d7c *src/grange.h
28536b480aebdca42b96f16708850f10 *src/gtf.h
17a1adaced23fab2a520e844aae35757 *src/refGenome.cpp
23b74a2363d531e4edb582eb85581503 *src/refGenome.h
c78104b1bd888edbb2bb22d70b8750f8 *src/tokenize.h
f9dd7baf4e4ac9f28e0e0357396fcfb5 *tests/test-all.R
05bf58d34d6a1e19d49c984fba6e8673 *tests/test_overlap_juncs.r
bd1413a19c26237b941b0dde46fc2e8b *tests/test_read_gtf.r
0b33e124085218a783d877ff90d1de42 *tests/test_unify_ranges.r
26b8d014653ab9db55e916fe28354d78 *vignettes/readGTF.Rnw
cad15949e7e1276f8bff38b842cbc0ec *vignettes/refGenome.Rnw
