b64a457429fe42ca5d681e5da18f45ac *DESCRIPTION
530b6f907d8cf893f7212f74bc032d18 *INDEX
0f5649d6ecfc09873d4a206116e595a9 *LICENSE
c9c413e3513c98481c9ce2e86139fd0d *Meta/Rd.rds
ab10e9b94db1127f97c724b3164434d4 *Meta/data.rds
8bd78fe4d71c3aeb1a0f4982ee51622b *Meta/features.rds
1aba59a8d1ce1b7b628cc39a2e9dcef5 *Meta/hsearch.rds
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65990afc79eb80a8f73171ec0f0a3b13 *Meta/nsInfo.rds
752240debaf10f30d5a84da99093ee11 *Meta/package.rds
99e186497b45c1f0792943514f070243 *Meta/vignette.rds
241c1a45959f543d4340444bfb24fe8c *NAMESPACE
b8fb16f5129aaa36d90f41a851bab655 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/TmCalculator
868cd94d30ca970bffc60dd08807be25 *R/TmCalculator.rdb
fc911d9947b5ed44d40fb16ae41a5469 *R/TmCalculator.rdx
15b61f64bb3061d9178e2db8dddd480e *R/sysdata.rdb
ff06fc3f32ac56e78ba1a6821641a1fe *R/sysdata.rdx
233d1f894ccfd71524b50643728be1c8 *README.md
dd53d894253395ac498fffcee18137cf *data/Rdata.rdb
baf496c3ee2ea5eb4e3ef4b9acb4d0df *data/Rdata.rds
11da870d8e54520b11a461c4ac4c7214 *data/Rdata.rdx
5181bb71e108ab7f7202dc81487b0ad0 *doc/genome_wide_tm_ecoli.R
4f9df58401b919c0ee2bc47150d78030 *doc/genome_wide_tm_ecoli.Rmd
2a2b903f49738cc98764eb4bf5c249c6 *doc/genome_wide_tm_ecoli.html
91710665dafe140ecec31e6ff9e7ceed *doc/hg38_performance_parallel.R
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42560f1afe1ac2a85981b74b58ad3ecd *extdata/BSgenome.Hsapiens.UCSC.hg38.fasta
2a5855eff0f80bab01b7b6dad7177cc8 *extdata/bench_hg38_cluster.csv
6860194e4fc59463051cb1f2b7c8ce2e *extdata/bench_hg38_laptop.csv
c391224144d13b9b95e5e2ec6a44b1d0 *extdata/crosstool_bench.csv
c1df41f245031ee8728ac73c526529e3 *extdata/crosstool_consistency.csv
fd78b904a716731eae8f2447e503abe6 *extdata/example1.fasta
c5eb560a352d26a6af1ad9d76b3b7a35 *extdata/example2.fasta
1a7f2e21649a26fb87c00775adea0a58 *extdata/nn_params_provenance_v1.1.1.md
d8a2908410895dea62f0294d03bff9b5 *help/AnIndex
55a77a569d48f55849e50e884aee185b *help/TmCalculator.rdb
b88369fcb9b8be00e40edf562a17e9a1 *help/TmCalculator.rdx
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f290a439f046ca2addae50b942d0ae6d *libs/x64/symbols.rds
1e6469940c20e92e884b060455b10848 *scripts/bench_crosstool.R
7fb0e538497e2e3977a316920703ddfd *scripts/bench_tm_calculate.R
190bdae9a8cdf8680b52258e7a9a17f8 *scripts/bench_tm_calculate.lsf
0e028f5c7d816c891d11d1439467f129 *scripts/bench_tm_calculate_local.sh
ae885880d1465d82418c9de1082ecd46 *scripts/find_isoGC_pairs.R
c826c753659dd6003773aa6e72d6bfb9 *scripts/fix_ecoli_rep_hotspots.R
8fbd130d9d1866a9a3c3a214291153ce *scripts/make_figure2.R
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b3d130de3b04fe910823960d73e7aa3d *scripts/make_tm_ASM584v2.R
69600b282a6466d7e2c58c6ec9a14ed3 *scripts/plot_crosstool.R
315e840aac6b4e97903257ea4b154b4c *scripts/quick_parallel_mac.R
9f0a80985e671f6a1b004e3c8a52a494 *scripts/setup_cluster_env.sh
16874ab3d0d7e1949aaa45e2396657ee *scripts/test_tm_calculate_merged.R
4f9df58401b919c0ee2bc47150d78030 *vignette-source/genome_wide_tm_ecoli.Rmd
17795b624886a2ddc8a404629a324e4f *vignette-source/hg38_performance_parallel.Rmd
684a840ade60aecba042ebf941b4c8ca *vignette-source/window_size_sensitivity.Rmd
