Package: CNVScope
Type: Package
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
        Analysis and Visualization
Version: 3.7.2
Date: 2022-03-30
Author: James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer
Maintainer: James Dalgleish <james.dalgleish@nih.gov>
BugReports: https://github.com/jamesdalg/CNVScope/issues/
Depends: R (>= 4.1.0),ggplot2
Imports: tidyr,reshape2,magrittr, jointseg,shiny,RCurl,foreach,
        GenomicInteractions,Matrix,OpenImageR,biomaRt,matrixStats,
        plyr,data.table,dplyr, doParallel,stringr,rtracklayer,Hmisc
Suggests: knitr, remotes,pwr,ComplexHeatmap,rmarkdown,
        HiCseg,igraph,visNetwork,circlize,plotly,
        InteractionSet,GenomicRanges,GenomicFeatures,IRanges,rslurm,
        shinythemes,shinycssloaders,DT,logging,heatmaply,
        S4Vectors,BiocManager,shinyjs,htmltools,htmlwidgets,
        GenomeInfoDb,BSgenome.Hsapiens.UCSC.hg19,tibble,smoothie
VignetteBuilder: knitr
URL: https://github.com/jamesdalg/CNVScope/
biocViews:
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
License: BSD_3_clause + file LICENSE
RoxygenNote: 7.1.2
LazyData: true
NeedsCompilation: no
Packaged: 2022-03-30 23:09:29 UTC; dalgleishjl
Repository: CRAN
Date/Publication: 2022-03-30 23:40:08 UTC
Built: R 4.4.3; ; 2025-12-15 04:53:52 UTC; windows
