Vaccine Coverage and Outbreak Risk Analysis


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Documentation for package ‘vaxineR’ version 0.1.0

Help Pages

calc_expected_infections Calculate the expected number of infections in a cohort
calc_re Calculate the effective reproduction number (Re)
florida_vaccine_coverage Kindergarten Vaccination Coverage for Florida Counties
plot_coverage_history Plot Historical Vaccination Coverage Rate
plot_outbreak_prob Plot Outbreak Probability vs. Coverage
plot_risk_curve Plot the Risk Curve of Expected Infections
prob_major_outbreak Calculate the probability of a major outbreak
prob_sec_case Calculate the probability of at least one secondary infection
summary_coverage Summarize Vaccination Coverage for a Given Year
summary_infection_risk Generate an Outbreak Risk Simulation Table