Multiple Testing for Hypotheses with Hierarchical or Group Structure

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Documentation for package ‘structSSI’ version 1.2.0

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structSSI-package Structured Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data
Adaptive.GBH Adaptive Group Benjamini-Hochberg Procedure
chlamydiae Chlamydiae Sub-Taxa of Global Patterns Data
estimate.pi0 Estimation of Proportion of Null Hypotheses among p-values
EstimatedHFDRControl Estimate FDR control variations for HFDR procedure
GBH Manage Group Benjamini-Hochberg Outputs
GBH,ANY Manage Group Benjamini-Hochberg Outputs
GBH-class Manage Group Benjamini-Hochberg Outputs
gtemp Global mean land-ocean temperature deviations
hFDR.adjust FDR Controlling Procedure for Hierarchically Structured Hypotheses
hypothesesTree-class Manage Hierarchical Test Results
initialize-method Manage Group Benjamini-Hochberg Outputs
initialize-method Manage Hierarchical Test Results
Oracle.GBH Oracle Group Benjamini-Hochberg Correction
plot-method Manage Group Benjamini-Hochberg Outputs
plot-method Manage Hierarchical Test Results
PlotHypTree Interactively VIsualize a HypothesisTree
show-method Manage Group Benjamini-Hochberg Outputs
show-method Manage Hierarchical Test Results
structSSI Structured Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data
summary-method Manage Group Benjamini-Hochberg Outputs
summary-method Manage Hierarchical Test Results
treePValues Create tree of p-values for phyloseq data