Plant Photobiology Related Functions and Data


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Documentation for package ‘photobiologyPlants’ version 0.6.1

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photobiologyPlants-package photobiologyPlants: Plant Photobiology Related Functions and Data
Betula_ermanii.mspct Spectral data for 'Betula ermanii' leaves
B_G Calculate photon ratios from spectral irradiance
carotenoids.mspct Absorbance spectra for carotenoids.
chlorophylls.mspct Absorbance spectra for chlorophylls.
chlorophylls_fluorescence.mspct Fluorescence emission spectra for chlorophylls.
CRYs.mspct CRY1, CRY2 and CRY3 absorbance spectra.
ET_ref Evapotranspiration
ET_ref_day Evapotranspiration
FR_ePAR Calculate photon ratios from spectral irradiance
FR_PAR Calculate photon ratios from spectral irradiance
FR_RpFR Calculate photon ratios from spectral irradiance
leaf_fluorescence.mspct Fluorescence emission spectra of leaves.
McCree_photosynthesis.mspct McCree's action spectra for whole-leaf photosynthesis.
net_irradiance Net radiation flux
Pfr_Ptot Calculate phytochrome photoequilibrium
Pfr_Ptot.default Calculate phytochrome photoequilibrium
Pfr_Ptot.numeric Calculate phytochrome photoequilibrium
Pfr_Ptot.source_spct Calculate phytochrome photoequilibrium
Pfr_Ptot_R_FR Pr:Ptot ratio (photoequilibrium) from R:FR photon ratio.
photobiologyPlants photobiologyPlants: Plant Photobiology Related Functions and Data
photon irradiances Constrained extended PAR from spectral irradiance
photon ratios Calculate photon ratios from spectral irradiance
PHOTs.mspct PHOT1 and PHOT2 absorbance spectra.
PHYs.mspct Tabulated data for Phytochrome Sigma
phytochrome.spct Tabulated data for Phytochrome Sigma
Phy_reaction_rates Phytochrome reaction rates
Phy_Sigma Phytochrome Sigma as a function of wavelength
Phy_Sigma_FR Pfr Sigma as a function of wavelength
Phy_Sigma_R Pr Sigma as a function of wavelength
psychrometric_constant Water vapour pressure
R_FR Calculate photon ratios from spectral irradiance
R_RpFR Calculate photon ratios from spectral irradiance
Solidago_altissima.mspct Spectral optical data for 'Solidago altissima' leaves
UVA1_UV Calculate photon ratios from spectral irradiance
UVA1_UVA Calculate photon ratios from spectral irradiance
UVA2_UV Calculate photon ratios from spectral irradiance
UVA2_UVA Calculate photon ratios from spectral irradiance
UVAlw_UV Calculate photon ratios from spectral irradiance
UVAsw_UV Calculate photon ratios from spectral irradiance
UVA_PAR Calculate photon ratios from spectral irradiance
UVA_UV Calculate photon ratios from spectral irradiance
UVB_PAR Calculate photon ratios from spectral irradiance
UVB_UV Calculate photon ratios from spectral irradiance
UVB_UVA Calculate photon ratios from spectral irradiance
UVR8s.mspct UVR8 absorbance spectrum
UV_PAR Calculate photon ratios from spectral irradiance
water_dp Water vapour pressure
water_fp Water vapour pressure
water_mvc2vp Water vapour pressure
water_RH2vp Water vapour pressure
water_vp2mvc Water vapour pressure
water_vp2RH Water vapour pressure
water_vp_sat Water vapour pressure
water_vp_sat_slope Water vapour pressure
xPAR_irrad Constrained extended PAR from spectral irradiance
xPAR_irrad.default Constrained extended PAR from spectral irradiance
xPAR_irrad.source_mspct Constrained extended PAR from spectral irradiance
xPAR_irrad.source_spct Constrained extended PAR from spectral irradiance
ZTLs.mspct ZTL absorbance spectra.