[.pep                   Subset PEP725 Data While Preserving Class
add_country             Add Country Information to a Dataset Based on
                        Latitude/Longitude
add_daylength           Add Daylength to Phenological Data
as.pep                  Coerce to PEP725 Data Object
bbch_description        Get BBCH Phase Description
calc_daylength          Calculate Daylength (Photoperiod)
calc_max_daylength      Maximum Daylength at a Latitude
calc_thermal_sum        Calculate Thermal Sum at Phenological Events
calc_thermal_units      Calculate Thermal Units (Growing Degree Days)
get_phenology_doys      Compute CTRL and SCEN Phenology Day-of-Year
                        Values
is.pep                  Test if Object is a PEP725 Data Object
kendall_tau             Mann-Kendall Z-Statistic
new_pep                 Create a PEP725 Phenological Data Object
pep-class               PEP725 Phenological Data Class
pep725_demo             Demonstrate the pep725 Package Functions
pep_cache_clear         Clear Cached PEP Data
pep_cache_info          Get Cache Information
pep_check_connectivity
                        Check Station-Year Connectivity
pep_check_phases        Check for Expected Phenological Phases
pep_check_phases_multi
                        Check Multiple Phases Across Species
pep_completeness        Assess Species and Phase Completeness of
                        Phenological Data
pep_coverage            Assess Data Coverage of PEP725 Phenological
                        Data
pep_download            Download Synthetic PEP725 Data
pep_flag_outliers       Flag Phenological Outliers
pep_import              Import and preprocess PEP725 phenological data
pep_plot_outliers       Visualize Phenological Outliers for Inspection
pep_quality             Assess Data Quality of Phenological
                        Observations
pep_second_events       Detect Second Flowering and Other Repeated
                        Phenological Events
pep_seed                Minimal Seed Dataset for Synthetic Data
                        Generation
pep_simulate            Simulate Synthetic PEP Data
pheno_anomaly           Calculate Phenological Anomalies
pheno_combine           Create Combined Phenological Time Series
pheno_gradient          Analyze Phenological Gradients with Elevation
                        or Latitude
pheno_leaflet           Interactive Leaflet Map to Select PEP725
                        Stations
pheno_map               Plot Phenology Station Maps
pheno_normals           Calculate Phenological Normals (Climatology)
pheno_plot              Plot Phenological Time Series
pheno_plot_hh           Plot Phenological Time Series for Heading and
                        Harvest
pheno_plot_timeseries   Plot Phenological Time Series
pheno_pls               Partial Least Squares Analysis for
                        Phenology-Temperature Relationships
pheno_regional          Compile Regional Phenology Data and Climate
                        Sensitivity Inputs
pheno_regional_hh       Compile Regional Phenological Time Series for
                        Heading and Harvest
pheno_synchrony         Analyze Phenological Synchrony Across Stations
pheno_trend_turning     Detect Trend Turning Points in Phenological
                        Time Series
plot.pep                Plot Method for PEP725 Data
plot.pep_completeness   Plot Method for Completeness Assessment
plot.pep_coverage       Plot Method for PEP Coverage
plot.pep_outliers       Plot Method for Outlier Detection Results
plot.pep_quality        Plot Method for Data Quality Assessment
plot.pheno_anomaly      Plot Method for Phenological Anomalies
plot.pheno_combined     Plot Method for Combined Time Series
plot.pheno_gradient     Plot Method for Phenological Gradient Analysis
plot.pheno_normals      Plot Method for Phenological Normals
plot.pheno_pls          Plot Method for PLS Phenology Results
plot.pheno_synchrony    Plot Method for Phenological Synchrony Analysis
plot.pheno_turning      Plot Method for Trend Turning Analysis
plot.second_events      Plot Method for Second Events Detection
plot_phenology_trends   Plot Robust Phenological Trends
print.pep               Print Method for PEP725 Data
print.pep_completeness
                        Print Method for Completeness Assessment
print.pep_coverage      Print Method for PEP Coverage
print.pep_outliers      Print Method for Outlier Detection Results
print.pep_quality       Print Method for Data Quality Assessment
print.phase_check       Print Method for Phase Check Results
print.phase_check_multi
                        Print Method for Multi-Species Phase Check
print.pheno_anomaly     Print Method for Phenological Anomalies
print.pheno_combined    Print Method for Combined Time Series
print.pheno_gradient    Print Method for Phenological Gradient Analysis
print.pheno_normals     Print Method for Phenological Normals
print.pheno_pls         Print Method for PLS Phenology Results
print.pheno_synchrony   Print Method for Phenological Synchrony
                        Analysis
print.pheno_turning     Print Method for Trend Turning Analysis
print.second_events     Print Method for Second Events Detection
select_phase            Select and Label Phenophases from PEP Time
                        Series
subspecies_report       Comprehensive Subspecies Availability Report
summarize_subspecies_availability
                        Summarize Subspecies Phenological Data
                        Availability
summary.pep             Summary Method for PEP725 Data
summary.pep_completeness
                        Summary Method for Completeness Assessment
summary.pep_outliers    Summary Method for Outlier Detection Results
summary.pep_quality     Summary Method for Data Quality Assessment
summary.pheno_anomaly   Summary Method for Phenological Anomalies
summary.pheno_normals   Summary Method for Phenological Normals
summary.pheno_pls       Summary Method for PLS Phenology Results
summary.pheno_synchrony
                        Summary Method for Phenological Synchrony
                        Analysis
summary.second_events   Summary Method for Second Events Detection
