* using log directory 'd:/Rcompile/CRANpkg/local/4.4/micompr.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'micompr/DESCRIPTION' ... OK
* this is package 'micompr' version '1.1.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'micompr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [3s] ERROR
Running examples in 'micompr-Ex.R' failed
The error most likely occurred in:

> ### Name: assumptions.cmpoutput
> ### Title: Get assumptions for parametric tests performed on output
> ###   comparisons
> ### Aliases: assumptions.cmpoutput
> 
> ### ** Examples
> 
> 
> # Create a cmpoutput object from the provided datasets
> cmp <- cmpoutput("All", 0.9, pphpc_ok$data[["All"]], pphpc_ok$obs_lvls)
> 
> # Get the assumptions for the parametric tests performed in cmp
> acmp <- assumptions(cmp)
Error in MVN::mvn(data[fidx, 1:min(nobs - 1, nvars)], mvnTest = "royston",  : 
  unused arguments (mvnTest = "royston", univariateTest = "SW")
Calls: assumptions -> assumptions.cmpoutput -> assumptions_manova
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [17s] ERROR
  Running 'testthat.R' [17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # Copyright (c) 2016 Nuno Fachada
  > # Distributed under the MIT License (http://opensource.org/licenses/MIT)
  > 
  > library(testthat)
  > 
  > test_check("micompr")
  Loading required package: micompr
  [ FAIL 4 | WARN 73 | SKIP 0 | PASS 287 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_assumptions.R:25:5'): assumptions_manova constructs the expected objects ──
  Error in `MVN::mvn(data[fidx, ], mvnTest = "royston", univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")
  Backtrace:
      ▆
   1. └─micompr::assumptions_manova(iris[, 1:4], iris[, 5]) at test_assumptions.R:25:5
  ── Error ('test_assumptions.R:59:5'): assumptions_manova throws the expected warnings ──
  Error in `MVN::mvn(data[fidx, 1:min(nobs - 1, nvars)], mvnTest = "royston", 
      univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")
  Backtrace:
      ▆
   1. ├─testthat::expect_warning(...) at test_assumptions.R:59:5
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. └─micompr::assumptions_manova(bogus_data, factors)
  ── Error ('test_cmpoutput.R:214:3'): assumptions.cmpoutput creates the correct object ──
  Error in `MVN::mvn(data[fidx, ], mvnTest = "royston", univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")
  Backtrace:
      ▆
   1. ├─micompr::assumptions(cmp) at test_cmpoutput.R:214:3
   2. └─micompr:::assumptions.cmpoutput(cmp)
   3.   └─micompr::assumptions_manova(scores[, 1:npcs[i]], obs_lvls)
  ── Error ('test_micomp.R:281:3'): micomp assumptions have the correct properties ──
  Error in `MVN::mvn(data[fidx, ], mvnTest = "royston", univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")
  Backtrace:
      ▆
   1. ├─micompr::assumptions(mic1a) at test_micomp.R:281:3
   2. └─micompr:::assumptions.micomp(mic1a)
   3.   └─base::lapply(obj, function(x) assumptions(x))
   4.     └─micompr (local) FUN(X[[i]], ...)
   5.       ├─micompr::assumptions(x)
   6.       └─micompr:::assumptions.cmpoutput(x)
   7.         └─micompr::assumptions_manova(scores[, 1:npcs[i]], obs_lvls)
  
  [ FAIL 4 | WARN 73 | SKIP 0 | PASS 287 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [25s] ERROR
Error(s) in re-building vignettes:
--- re-building 'paper.Rnw' using knitr

Quitting from paper.Rnw:340-342 [sunspot3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `MVN::mvn()`:
! unused arguments (mvnTest = "royston", univariateTest = "SW")
---
Backtrace:
    x
 1. +-micompr::assumptions(cmp)
 2. \-micompr:::assumptions.cmpoutput(cmp)
 3.   \-micompr::assumptions_manova(scores[, 1:npcs[i]], obs_lvls)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'paper.Rnw' failed with diagnostics:
unused arguments (mvnTest = "royston", univariateTest = "SW")
--- failed re-building 'paper.Rnw'

--- re-building 'tolatex-examples.Rnw' using knitr
--- finished re-building 'tolatex-examples.Rnw'

SUMMARY: processing the following file failed:
  'paper.Rnw'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [25s] OK
* checking HTML version of manual ... [9s] OK
* DONE
Status: 3 ERRORs