* using log directory 'd:/Rcompile/CRANpkg/local/4.4/fbar.Rcheck' * using R version 4.4.3 (2025-02-28 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'fbar/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'fbar' version '0.6.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'fbar' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [10s] OK * checking whether the package can be loaded with stated dependencies ... [9s] OK * checking whether the package can be unloaded cleanly ... [10s] OK * checking whether the namespace can be loaded with stated dependencies ... [10s] OK * checking whether the namespace can be unloaded cleanly ... [10s] OK * checking loading without being on the library search path ... [11s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [11s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [138s] ERROR Running 'spelling.R' [0s] Running 'testthat.R' [137s] Running the tests in 'tests/testthat.R' failed. Complete output: > suppressMessages(library(testthat)) > > test_check("fbar") Loading required package: fbar [ FAIL 5 | WARN 10 | SKIP 2 | PASS 41 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • known theoretical issue (2): 'test-full-size.R:36:3', 'test-full-size.R:46:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-utilities.R:27:5'): Works correctly with http://bigg.ucsd.edu/static/models/iJO1366.json ── Error in `open.connection(con, "rb")`: cannot open the connection to 'http://bigg.ucsd.edu/static/models/iJO1366.json' Backtrace: ▆ 1. └─fbar::get_BiGG(address) at test-utilities.R:27:5 2. └─jsonlite::fromJSON(address) 3. └─jsonlite:::parse_and_simplify(...) 4. └─jsonlite:::parseJSON(txt, bigint_as_char) 5. └─jsonlite:::parse_con(txt, bigint_as_char) 6. ├─base::open(con, "rb") 7. └─base::open.connection(con, "rb") ── Error ('test-utilities.R:27:5'): Works correctly with http://bigg.ucsd.edu/static/models/iAF1260.json ── Error in `open.connection(con, "rb")`: cannot open the connection to 'http://bigg.ucsd.edu/static/models/iAF1260.json' Backtrace: ▆ 1. └─fbar::get_BiGG(address) at test-utilities.R:27:5 2. └─jsonlite::fromJSON(address) 3. └─jsonlite:::parse_and_simplify(...) 4. └─jsonlite:::parseJSON(txt, bigint_as_char) 5. └─jsonlite:::parse_con(txt, bigint_as_char) 6. ├─base::open(con, "rb") 7. └─base::open.connection(con, "rb") ── Error ('test-utilities.R:27:5'): Works correctly with http://bigg.ucsd.edu/api/v2/models/iND750/download ── Error in `open.connection(con, "rb")`: cannot open the connection to 'http://bigg.ucsd.edu/api/v2/models/iND750/download' Backtrace: ▆ 1. └─fbar::get_BiGG(address) at test-utilities.R:27:5 2. └─jsonlite::fromJSON(address) 3. └─jsonlite:::parse_and_simplify(...) 4. └─jsonlite:::parseJSON(txt, bigint_as_char) 5. └─jsonlite:::parse_con(txt, bigint_as_char) 6. ├─base::open(con, "rb") 7. └─base::open.connection(con, "rb") ── Error ('test-utilities.R:27:5'): Works correctly with http://bigg.ucsd.edu/static/models/e_coli_core.json ── Error in `open.connection(con, "rb")`: cannot open the connection to 'http://bigg.ucsd.edu/static/models/e_coli_core.json' Backtrace: ▆ 1. └─fbar::get_BiGG(address) at test-utilities.R:27:5 2. └─jsonlite::fromJSON(address) 3. └─jsonlite:::parse_and_simplify(...) 4. └─jsonlite:::parseJSON(txt, bigint_as_char) 5. └─jsonlite:::parse_con(txt, bigint_as_char) 6. ├─base::open(con, "rb") 7. └─base::open.connection(con, "rb") ── Error ('test-utilities.R:27:5'): Works correctly with http://bigg.ucsd.edu/static/models/RECON1.json ── Error in `open.connection(con, "rb")`: cannot open the connection to 'http://bigg.ucsd.edu/static/models/RECON1.json' Backtrace: ▆ 1. └─fbar::get_BiGG(address) at test-utilities.R:27:5 2. └─jsonlite::fromJSON(address) 3. └─jsonlite:::parse_and_simplify(...) 4. └─jsonlite:::parseJSON(txt, bigint_as_char) 5. └─jsonlite:::parse_con(txt, bigint_as_char) 6. ├─base::open(con, "rb") 7. └─base::open.connection(con, "rb") [ FAIL 5 | WARN 10 | SKIP 2 | PASS 41 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [35s] OK * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [4s] OK * DONE Status: 1 ERROR