Bioinformatic Distances

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Documentation for package ‘BIDistances’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calculateMemoryDemandGPU	Plan Device-Memory Batches for Weighted Euclidean Distances
Cosine_Distance	Cosine Distance Between Rows
dip.test.fast	Fast Hartigan Dip Test for Large Samples
dip_test_fast	Fast Hartigan Dip Test for Large Samples
distance-conventions	Distance, Metric, and Dissimilarity Conventions in BIDistances
DistanceDistributionAnalysis	Analyze and Select Distance Distributions
DistanceDistributions	Calculate and Select Informative Distance Distributions
DistanceMatrix	Pairwise Distance, Dissimilarity, or Similarity Matrix
DistanceOneToAll	Distances from One Point to All Rows of a Matrix
DistanceProperties	Mathematical Property Registry for BIDistances Methods
DTW_Distance	Dynamic Time Warping Distance
EndresSchindelin_Distance	Endres-Schindelin Distance Matrix Between Variables
endresSchindelin_Distribution	Endres-Schindelin Distance Between Probability Mass Vectors
endresSchindelin_TwoSamplePDF	Endres-Schindelin Distance Between Two Samples
EuclideanGPU_Distance	Weighted Euclidean Distances with an Optional OpenCL Backend
EuclideanMulticore_Distance	Fast Pairwise Euclidean Distance Matrix
fast_dip_stat	Fast Hartigan Dip Statistic
fast_dip_test	Fast Hartigan Dip Test for Large Samples
fast_dip_test_matrix	Fast Hartigan Dip Tests for Matrix Columns
Fractional_Distance	Fractional Minkowski Pairwise Distances
Gini_Distance	Gini Distance Between Cases
Hearingloss_N109	Hearingloss data
Hellinger_Distance	Hellinger Distance Between Binary-Class Conditional Densities
Hepta	Hepta introduced in [Ultsch, 2003]
IntraClusterBoundaryCounts	Count Intra-Cluster Distances Above a Boundary
Jaccard_Distance	Generalized Jaccard Distance Between Cases
KNearestNeighborsFromDistance	Find Nearest Neighbors from a Distance Matrix
Kullback_Leibler_div	Smoothed Kullback-Leibler Divergence
Mahalanobis_Distance	Pairwise Squared Generalized Mahalanobis Distances
Minkowski_Distance	Weighted Minkowski Distances with Selectable CPU and OpenCL Backends
MSMD_Distance	Move-Split-Merge Distance
NearestNeighborIndex	Index of the Nearest Other Row
SharedNeighbor_Distance	Shared-Nearest-Neighbor Distance
Tfidf_dist	TF-IDF-Derived Distance Between Genes
Tfidf_Distance	TF-IDF-Derived Distance Between Genes
ToroidalEuclideanDistanceOneToAll	Toroidal Euclidean Distances from One Position
ToroidalEuclidean_Distance	Pairwise Toroidal Euclidean Distances
TransformSimilarity2MetricDistance	Transform a Similarity Matrix to a Metric Distance Matrix
TWED_Distance	Time Warp Edit Distance
VariablePrecision	Smallest Within-Variable Differences
Wasserstein_Distance	Wasserstein Distance Between Cases