Package: MosaiClusteR
Type: Package
Title: An Umbrella Framework for Multi-Source and Multi-Omics
        Clustering
Version: 0.1.0
Authors@R: c(
    person("Bernard Isekah", "Osang'ir", email = "bernard.osangir@sckcen.be",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0002-5557-3602")),
    person("Marijke", "Van Moerbeke", role = "aut"),
    person("Ziv", "Shkedy", role = "ctb"),
    person("Surya", "Gupta", role = "ctb"),
    person("Jürgen", "Claesen", role = "ctb"))
Description: An umbrella framework ("MoSaIC" = Multi-Omics Source-Agnostic
    Integration Clustering in R) that unifies a large collection
    of multi-source / multi-omics clustering methodologies behind a single,
    consistent list-of-matrices interface. It spans five integration
    paradigms - direct, similarity-based, graph-based, voting-based consensus,
    and hierarchy-based - and bundles a complete downstream workflow for
    method comparison and evaluation. The package features the multi-source
    the ability to compare many algorithms on the same footing, a data-nugget
    based feature-weighting scheme as a robust, big-data-friendly alternative to
    variance weighting, and a downstream suite for cluster characterisation,
    visualisation and biological interpretation.
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0)
Imports: stats, utils, methods, graphics, grDevices, cluster,
        fastcluster, matrixStats, FD, ade4, e1071, gtools, data.table,
        Rcpp, Rdpack
LinkingTo: Rcpp
Suggests: SNFtool, datanugget, WCluster, LUCIDus, igraph, lsa,
        analogue, FactoMineR, pls, circlize, gplots, dendextend,
        plotrix, limma, MLP, biomaRt, org.Hs.eg.db, Biobase, a4Core,
        a4Base, plyr, genefilter, ggplot2, gridExtra, uwot, Rtsne,
        MOFAdata, testthat (>= 3.0.0), knitr, rmarkdown
RdMacros: Rdpack
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/lucp12891/MosaiClusteR
BugReports: https://github.com/lucp12891/MosaiClusteR/issues
NeedsCompilation: yes
Config/roxygen2/version: 8.0.0
Packaged: 2026-07-20 16:19:03 UTC; hp
Author: Bernard Isekah Osang'ir [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5557-3602>),
  Marijke Van Moerbeke [aut],
  Ziv Shkedy [ctb],
  Surya Gupta [ctb],
  Jürgen Claesen [ctb]
Maintainer: Bernard Isekah Osang'ir <bernard.osangir@sckcen.be>
Repository: CRAN
Date/Publication: 2026-07-29 18:30:07 UTC
Built: R 4.7.0; x86_64-w64-mingw32; 2026-08-18 02:45:53 UTC; windows
Archs: x64
