Offline Taxonomic Name Matching Against Local Darwin Core
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Documentation for package ‘taxify’ version 0.2.12
Help Pages
| add_algae_traits | Add macroalgal functional traits (AlgaeTraits) |
| add_alien_first_records | Add alien species first record years |
| add_amphibio | Add amphibian life-history traits (AmphiBIO) |
| add_anage | Add longevity and life-history traits (AnAge) |
| add_animaltraits | Add cross-taxon body mass and metabolic rate (AnimalTraits) |
| add_arthropod_traits | Add arthropod life-history traits (NW European Arthropods) |
| add_avonet | Add bird morphology and migration (AVONET) |
| add_baseflor | Add plant traits from Baseflor (Catminat / Julve) |
| add_col_info | Add COL-specific columns |
| add_common_names | Add common (vernacular) names |
| add_conservation_status | Add conservation status |
| add_data | Add custom data by taxonomic matching |
| add_diaz_traits | Add seed mass and plant height (Diaz et al. 2022) |
| add_ecoflora | Add British plant traits from Ecoflora |
| add_eive | Add EIVE ecological indicator values |
| add_elton_traits | Add diet, foraging, and body mass (EltonTraits 1.0) |
| add_fishbase | Add fish traits (FishBase) |
| add_fish_traits | Add freshwater fish morphological traits (FISHMORPH) |
| add_floraweb | Add German plant traits from FloraWeb |
| add_fungal_traits | Add fungal lifestyle and trait data (FungalTraits) |
| add_funguild | Add fungal functional guild data (FUNGuild) |
| add_gbif_info | Add GBIF-specific columns |
| add_glonaf | Add naturalized alien flora status (GloNAF) |
| add_hybrid_info | Add hybrid parent and type information |
| add_invasive_status | Add invasive species status |
| add_leda | Add plant traits from LEDA Traitbase |
| add_leptraits | Add butterfly traits (LepTraits) |
| add_lizard_traits | Add lizard life-history and ecological traits (Meiri 2018) |
| add_pantheria | Add mammal life-history traits (PanTHERIA) |
| add_pignatti | Add Italian plant traits from Pignatti (on demand, via TR8) |
| add_qualifier_info | Add qualifier information |
| add_wcvp | Add WCVP native range status |
| add_wfo_info | Add WFO-specific columns |
| add_woodiness | Add woodiness classification |
| cite | Cite data sources used in a taxify result |
| export_data | Export a taxify result to file |
| list_enrichments | List available enrichments |
| lookup_genus | Look up a genus in the register |
| print.taxify_result | Print a taxify_result |
| summary.taxify_result | Summarise a taxify_result |
| taxify | Match taxonomic names against local backbone databases |
| taxify_clear_cache | Clear all cached backbones |
| taxify_data_dir | Get the taxify data directory |
| taxify_download | Download a backbone database |
| taxify_download_enrichment | Download one or more enrichment .vtr files |
| taxify_download_vtr | Download a taxify backbone |
| taxify_example_data | Path to the bundled example database |
| taxify_load_register | Load the unified genus register into memory |
| taxify_long | Reshape grouped enrichment columns to long format |
| taxify_refresh_manifest | Invalidate the session manifest cache |
| taxify_register_coverage | Show backend coverage for a genus |