821055e4408ce99c0b29a3396ddf0acd *DESCRIPTION
530b6f907d8cf893f7212f74bc032d18 *INDEX
0f5649d6ecfc09873d4a206116e595a9 *LICENSE
5cfa462b01a5738fcab34db6933fd0e2 *Meta/Rd.rds
032cc7c29648f051ccb293196a00849b *Meta/data.rds
37d8b81a466ed6231df3028dcc22e6be *Meta/features.rds
9dae6218453894e620e747231089a43d *Meta/hsearch.rds
2f86bad5a91a5fc573dede16a8411ff0 *Meta/links.rds
dc31c84729b8cbe6836b384f8ac98326 *Meta/nsInfo.rds
132c777214a3d492c30e1251920819ab *Meta/package.rds
99e186497b45c1f0792943514f070243 *Meta/vignette.rds
241c1a45959f543d4340444bfb24fe8c *NAMESPACE
b8fb16f5129aaa36d90f41a851bab655 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/TmCalculator
7f5ef997c70b5773b0fd03fe852a3e83 *R/TmCalculator.rdb
1606675e5937927392fdc1b561d34397 *R/TmCalculator.rdx
322dfc091b95b6fbeddd381774a56a7c *R/sysdata.rdb
e93e4867841120f774041e71a48a6365 *R/sysdata.rdx
233d1f894ccfd71524b50643728be1c8 *README.md
8a0e1e7b2e5cad787a9ae6c4fadf420d *data/Rdata.rdb
79bb04bb23610cdf76973d9700cf9ab8 *data/Rdata.rds
ebf04787709752b7963a8af2f7bf4713 *data/Rdata.rdx
5181bb71e108ab7f7202dc81487b0ad0 *doc/genome_wide_tm_ecoli.R
4f9df58401b919c0ee2bc47150d78030 *doc/genome_wide_tm_ecoli.Rmd
2a2b903f49738cc98764eb4bf5c249c6 *doc/genome_wide_tm_ecoli.html
91710665dafe140ecec31e6ff9e7ceed *doc/hg38_performance_parallel.R
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684a840ade60aecba042ebf941b4c8ca *doc/window_size_sensitivity.Rmd
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42560f1afe1ac2a85981b74b58ad3ecd *extdata/BSgenome.Hsapiens.UCSC.hg38.fasta
2a5855eff0f80bab01b7b6dad7177cc8 *extdata/bench_hg38_cluster.csv
6860194e4fc59463051cb1f2b7c8ce2e *extdata/bench_hg38_laptop.csv
c391224144d13b9b95e5e2ec6a44b1d0 *extdata/crosstool_bench.csv
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fd78b904a716731eae8f2447e503abe6 *extdata/example1.fasta
c5eb560a352d26a6af1ad9d76b3b7a35 *extdata/example2.fasta
1a7f2e21649a26fb87c00775adea0a58 *extdata/nn_params_provenance_v1.1.1.md
d8a2908410895dea62f0294d03bff9b5 *help/AnIndex
ccce92a8bc6da757e18587be772beefd *help/TmCalculator.rdb
cb54e5c9b2162c9cd6274815128b8505 *help/TmCalculator.rdx
9bdf7427b12cb2ad59d3deb57b2f81f6 *help/aliases.rds
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163d505dd3dd17fdf3fa08618f1bc939 *help/paths.rds
d4a775a49956d54269561b7cd601bf79 *html/00Index.html
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0fef3721130a6feba18853dd99e0326f *libs/x64/TmCalculator.dll
f30b533a8e03ab01299062ba69993c1c *libs/x64/symbols.rds
1e6469940c20e92e884b060455b10848 *scripts/bench_crosstool.R
7fb0e538497e2e3977a316920703ddfd *scripts/bench_tm_calculate.R
190bdae9a8cdf8680b52258e7a9a17f8 *scripts/bench_tm_calculate.lsf
0e028f5c7d816c891d11d1439467f129 *scripts/bench_tm_calculate_local.sh
ae885880d1465d82418c9de1082ecd46 *scripts/find_isoGC_pairs.R
c826c753659dd6003773aa6e72d6bfb9 *scripts/fix_ecoli_rep_hotspots.R
8fbd130d9d1866a9a3c3a214291153ce *scripts/make_figure2.R
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b3d130de3b04fe910823960d73e7aa3d *scripts/make_tm_ASM584v2.R
69600b282a6466d7e2c58c6ec9a14ed3 *scripts/plot_crosstool.R
315e840aac6b4e97903257ea4b154b4c *scripts/quick_parallel_mac.R
9f0a80985e671f6a1b004e3c8a52a494 *scripts/setup_cluster_env.sh
16874ab3d0d7e1949aaa45e2396657ee *scripts/test_tm_calculate_merged.R
4f9df58401b919c0ee2bc47150d78030 *vignette-source/genome_wide_tm_ecoli.Rmd
17795b624886a2ddc8a404629a324e4f *vignette-source/hg38_performance_parallel.Rmd
684a840ade60aecba042ebf941b4c8ca *vignette-source/window_size_sensitivity.Rmd
