T-Rex Selector: High-Dimensional Variable Selection & FDR Control

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Documentation for package ‘TRexSelector’ version 2.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

as.matrix.mmap_matrix	Get Zero-Copy View as Numeric Vector (Block)
dim.mmap_matrix	Get mmap_matrix dimensions
Gauss_data	Toy data generated from a Gaussian linear model
mem_matrix	Memory-Mapped Matrix Object
mem_matrix_from	Convert R Matrix to System Memory Mapped Matrix
MLElasticNet	Elastic Net (coordinate-descent path)
MLElasticNetCV	Elastic Net with Cross-Validation
MLLpNormScaler	Lp-Norm Scaler
MLPCA	Principal Component Analysis
MLRidge	Ridge Regression Solver
MLRidgeCV	Ridge Regression with Cross-Validation
MLSVD	SVD Solver
MLZScoreScaler	Z-Score Scaler
ml_agglomerative_cluster	Agglomerative Clustering
ml_cut_tree	Cut Hierarchical Linkage Matrix
ml_distance_metric	Distance Metrics
ml_linkage_method	Linkage Methods
print.mmap_matrix	Print mmap_matrix
TACGP_Solver	T-ACGP Solver
TAFS_Solver	T-AFS Solver
TCDENET_Solver	T-CDENET Solver
TCDIENET_Solver	T-CDIENET Solver
TCDLASSO_Solver	T-CDLASSO Solver
TCDTIKNET_Solver	T-CDTIKNET Solver
TENETAug_Solver	T-ENET-Aug Solver
TENET_Solver	T-ENET Solver
TGP_Solver	T-GP Solver
TIENETAug_Solver	T-IENET-Aug Solver
TIENET_Solver	T-IENET Solver (native pathwise)
TIKNET_Solver	T-TIKNET Solver
TLARS_Solver	T-LARS Solver
TLASSO_Solver	T-LASSO Solver
TMP_Solver	T-MP Solver
TNCGMP_Solver	T-NCGMP Solver
TOMP_Solver	T-OMP Solver
TOOLS_Solver	T-OLS Solver
TRexBiobankScreeningSelector	Biobank Screen T-Rex Selector
TRexDASelector	Dependency-Aware T-Rex Selector (TRexDA)
TRexGVSSelector	T-Rex Selector with Group Variable Selection (TRex GVS)
TRexScreeningSelector	Screen T-Rex Selector
TRexSelector	T-Rex Selector
TRexSPCASelector	T-Rex Sparse PCA Selector
TRexTikhonovSelector	T-Rex Selector with a general Tikhonov penalty
trex_biobank_control	TRex Biobank Control Parameters
trex_control	TRex Control Parameters
trex_da_control	TRex DA Control Parameters
trex_dummy_distribution	TRex Dummy Variable Distribution
trex_fdp	Compute False Discovery Proportion (FDP) using index sets
trex_fdp_dense	Compute False Discovery Proportion (FDP) using dense vectors
trex_gamma_to_k	Build a Tikhonov penalty matrix K from an operator Gamma
trex_get_max_threads	The library's thread budget
trex_get_num_threads	The library's thread budget
trex_gvs_control	TRex GVS Control Parameters
trex_normalize_design	Apply the T-Rex data normalization to a design
trex_precision	Compute Precision using index sets
trex_recall	Compute Recall using index sets
trex_screen_control	TRex Screen Control Parameters
trex_set_num_threads	The library's thread budget
trex_spca_control	T-Rex SPCA Control Parameters
trex_tikhonov_control	TRex Tikhonov Control Parameters
trex_tikhonov_lambda2_power_rule	The knee of the full lambda_2 profile of the Tikhonov T-Rex
trex_tpp	Compute True Positive Proportion (TPP) using index sets
trex_tpp_dense	Compute True Positive Proportion (TPP) using dense vectors
tsolver_options	T-Solver Options
TSTAGEWISE_Solver	T-Stagewise Solver
TSTEPWISE_Solver	T-Stepwise Solver
[.mmap_matrix	Extract or assign blocks in an mmap_matrix
[<-.mmap_matrix	Extract or assign blocks in an mmap_matrix